Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RG805_RS06320 Genome accession   NZ_CP102626
Coordinates   1244894..1247290 (-) Length   798 a.a.
NCBI ID   WP_003766970.1    Uniprot ID   -
Organism   Listeria innocua strain 2012L-5520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1239894..1252290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG805_RS06300 (MXK52_06295) - 1240367..1241062 (-) 696 WP_003766965.1 ABC transporter ATP-binding protein -
  RG805_RS06305 (MXK52_06300) - 1241071..1242573 (-) 1503 WP_003766966.1 ABC transporter permease -
  RG805_RS06310 (MXK52_06305) pieR 1242742..1243428 (+) 687 WP_003766968.1 two component system response regulator PieR -
  RG805_RS06315 (MXK52_06310) pieS 1243425..1244864 (+) 1440 WP_003766969.1 two component system sensor histidine kinase PieS -
  RG805_RS06320 (MXK52_06315) recD2 1244894..1247290 (-) 2397 WP_003766970.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RG805_RS06325 (MXK52_06320) - 1247316..1247954 (-) 639 WP_010991587.1 tetratricopeptide repeat protein -
  RG805_RS06330 (MXK52_06325) - 1247998..1248738 (-) 741 WP_003766975.1 alpha/beta hydrolase -
  RG805_RS06335 (MXK52_06330) mnmA 1248856..1249971 (-) 1116 WP_003766976.1 tRNA 2-thiouridine(34) synthase MnmA -
  RG805_RS06340 (MXK52_06335) - 1249990..1251138 (-) 1149 WP_003766977.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90104.38 Da        Isoelectric Point: 4.9395

>NTDB_id=718175 RG805_RS06320 WP_003766970.1 1244894..1247290(-) (recD2) [Listeria innocua strain 2012L-5520]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNANWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGTAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQAILLQQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGESQRAALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILKSKQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFAKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLMSEDVMLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=718175 RG805_RS06320 WP_003766970.1 1244894..1247290(-) (recD2) [Listeria innocua strain 2012L-5520]
ATGGCTGAACAAGAATCTCTCGCCTTATTTAATGATACCCCAGAAGAACTTTTCATGAAGGGGACGATGTTGTCTACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTGGTAAGGATTCTAGTAAAAGAGACGAATGCGAATTGGGATGAAAAGGATA
TTATTGTAACTGGTTTTTTTCCAGCGCTTCATGAACAAGAAGTGTATACTTTTTACGGGAAAATGCAGGAACATGCTAAA
TTTGGTCAGCAATTTAAAGCGGACCGATTTCGAAAAGAAATGCCTCAATCTCGCGCTGGCTTGATTAACTATCTTTCAGG
GGAACTTTTCAAGGGGATTGGTAAAGTAACGGCGGAAAACATTGTCGATACAATTGGCGATGACGCGATTACGAAAATAC
TATCTGACCCAAGTTTATTAAATACTGTTCCTAAACTACCTTCTGGAACAGCGGAAAGCTTGCTTGCTTCCCTTAGAGAA
AATCAAGGTCTAGAGCATGTGATGGTTGGTTTAAATGAATATGGCTTTGGTCCACAATTATCCATGAAAATTTTTCAGGT
ATATAAACAAAATGCGATCGAAGTGCTAGAAAATAATCCTTATAAATTAATTGAAGATGTTAAAGGAATTGGTTTCCAGC
GTGCCGATGAGCTTGGACGTAAGCTTGGACTTGGCGGAAATCATCCAGAACGACTTAGAGCAGGAATTTTATTTATGTTA
GATTCCGTTTGTATGCAGCAAGGTCATGTCTATATGGAACAAGAGGTTTTGCTCGGTGAAGTAACTTATTTGCTAGAAGA
AAGTGAAGGCATTAGGATTGATCAGGCAATTTTACTGCAACAAGTAGAAAAACTTGCAGAAGAACAAAAAATAATTACAG
AAAATACGCGTGTCTATATGCCGTCACTTTATTATTCAGAAAGCGGTTTTGCTTATCATGTAAAACGAATGTTAAAGCAA
ACAGAGTATCAAGAACAATTTCCGCAATCGGAGTTTTTATTAGCGCTAGGAGAACTTGAAGAACGTATTGGCGTGCATTA
CGGCGAATCTCAACGCGCGGCATTAGAACAAGCATTAATGTCACCGATGCTCGTCCTTACTGGAGGACCAGGAACAGGAA
AAACGACTGTTATTAAAGGAATTGTAGAATTATATGCCGAGTTAAATGGTGTTAGTCTTGATCCACACGCCTATAAAGAC
GGTGCGACTTTTCCAGTGTTACTCGCAGCTCCAACAGGTCGTGCGGCTAAACGAATGTCTGAATCCACTGGTCTTCCTGC
AATGACAATTCACCGGTTACTTGGAATGAATGGCCAAGAACAGATGGATGACGATGCAGAACGATTAATTGATGGACGTT
TGTTAATTGTGGATGAGATGTCAATGGTGGATATTTGGCTTGCGAATCAATTGTTCCGCGCTTTACCTGCTCATATGCAA
GTAGTGCTCGTTGGTGACCAAGACCAACTTCCTTCTGTTGGACCAGGTCAAGTATTAAAAGATATTCTAAAGTCAAAACA
AATTCCAACAGTTGCACTTTCAGATATTTATCGGCAAAAAGATGGTTCTTCAATCATTGAAATGGCTCATTATATTAAAG
AAGGAATGTTGCCAGCCGATTTTGCGAAAAATAGTGCGGATCGATCATTTTTCCACTGTACAGTAAATCAAATTGGCGAC
GTTGTGGAACAAGTCGTGAAAAATGCTAAAAATAAAGGTTTTCGTGCAAAAGATATTCAAGTGTTGGCTCCAATGTATCG
CGGTCCAGCGGGGATTGATATATTAAATAAAAAACTACAAGAAATCTTTAATCCAAACGACACTGGTCGCCGAAAAGAAG
TACAATTTGGCGAAATCAAATATCGGGTTCACGACAAAGTGTTACAACTAATTAACCAACCAGAAAAAAATGTTTTTAAC
GGTGACATTGGTGAAATCGTATCCATTATTTATGCCAAAGAAAATACCGAGAAACAAGATTTAATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTATTACAGGCAAGAATTTAATCAATTGACCCATGCTTATTGTTGTTCGATTCATAAAGCGCAGG
GAAGTGAATTTCCGATAGTTATTATGCCAATTGTGCGTAGTTATTACCGGATGTTACGTAGAGATTTGTTATATACTGGT
GTTACAAGAAGTAAACAATTCCTAATTCTTTGCGGAGAAGAAGAAGCTTTCCGAATGGGTGTAGAACGTGTAGATGAAAA
TAAGCGAAATACCACGCTATCGGAACGTTTAATGAGTGAAGATGTGATGCTCGAACAGATGACAAATAAACGAATATTAA
CTGCCGAAAACATTACGGAGATTGATCCGATGATTGGGATGGAAGGAATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.107

98.747

0.564