Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PSH70_RS00460 Genome accession   NZ_CP117438
Coordinates   96290..97636 (-) Length   448 a.a.
NCBI ID   WP_053253681.1    Uniprot ID   A0ABY1TA33
Organism   Pseudomonas fluorescens strain FP2327     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 91290..102636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH70_RS00445 (PSH70_00445) - 91378..93444 (+) 2067 WP_305439493.1 GGDEF domain-containing protein -
  PSH70_RS00450 (PSH70_00450) - 93543..94319 (+) 777 WP_305439495.1 N-acetylmuramoyl-L-alanine amidase -
  PSH70_RS00455 (PSH70_00455) - 94492..96279 (-) 1788 WP_073638251.1 ATP-binding protein -
  PSH70_RS00460 (PSH70_00460) luxO 96290..97636 (-) 1347 WP_053253681.1 sigma-54-dependent response regulator transcription factor AlgB Regulator
  PSH70_RS00465 (PSH70_00465) - 98027..98314 (+) 288 WP_053253682.1 hypothetical protein -
  PSH70_RS00470 (PSH70_00470) - 98392..98556 (+) 165 WP_003170804.1 DUF1328 domain-containing protein -
  PSH70_RS00475 (PSH70_00475) - 98559..99026 (+) 468 WP_053253683.1 inhibitor of vertebrate lysozyme family protein -
  PSH70_RS00480 (PSH70_00480) gltP 99757..101088 (+) 1332 WP_053253684.1 glutamate/aspartate:proton symporter GltP -
  PSH70_RS00485 (PSH70_00485) - 101185..102414 (+) 1230 WP_053253685.1 nucleoside recognition domain-containing protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49610.51 Da        Isoelectric Point: 5.4019

>NTDB_id=718075 PSH70_RS00460 WP_053253681.1 96290..97636(-) (luxO) [Pseudomonas fluorescens strain FP2327]
MESAKELQGRILLVDDESAILRTFRYCLEDEGYNVATANSAAQADALMQRQVFDLCFLDLRLGEDNGLDVLAQMRIQAPW
MRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEVRQPKDGLDSHSPAMMVVLET
ARQVAGTDANILILGESGTGKGELARAIHGWSKRSKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYRLNVITLHLPPLRE
RSEDILTLADRFLARFVKEYARPARGFSDSAREALLNYRWPGNIRELRNVVERASIICPQEKVEISHLGMAEQPTNNAPR
IGAALSLDELEKAHIGAVLATSDTLDQAARTLGIDASTLYRKRKQYNL

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=718075 PSH70_RS00460 WP_053253681.1 96290..97636(-) (luxO) [Pseudomonas fluorescens strain FP2327]
ATGGAATCAGCCAAGGAACTTCAAGGCCGCATTCTTTTAGTGGATGACGAATCCGCGATCCTTCGCACCTTCCGCTACTG
CCTGGAAGATGAAGGCTACAACGTAGCGACCGCCAACAGCGCCGCCCAAGCCGATGCCCTGATGCAACGCCAGGTGTTTG
ACCTGTGCTTCCTGGATTTGCGCCTGGGCGAAGATAACGGCCTGGATGTATTGGCGCAGATGCGTATCCAGGCGCCGTGG
ATGCGCGTGGTCATTGTTACCGCGCATTCCGCCGTAGACACCGCAGTCGATGCGATCCAGGCCGGCGCCGCCGACTACCT
GGTCAAACCGTGCAGCCCTGACCAATTACGGCTGGCCACCGCCAAGCAGTTGGAAGTGCGCCAACTGTCCGCCCGCCTGG
AAGCGCTGGAAGGCGAAGTACGCCAGCCCAAGGACGGGCTCGACTCCCACAGCCCGGCGATGATGGTGGTACTGGAAACC
GCACGCCAAGTTGCCGGGACTGACGCCAATATCCTGATTCTGGGCGAGTCCGGCACCGGTAAAGGCGAGTTGGCGCGCGC
CATTCACGGCTGGAGCAAACGTTCGAAAAAATCCTGCGTGACCATCAACTGCCCGTCACTGACCGCGGAACTGATGGAAA
GCGAATTGTTCGGCCACAGCCGCGGCGCGTTTACCGGTGCCAGTGAGAGCACATTGGGCCGCGTCAACCAGGCCGACGGT
GGCACGCTGTTTCTCGACGAAATCGGCGACTTCCCCCTCACTTTGCAACCCAAATTGCTGCGTTTTATCCAAGACAAGGA
ATATGAGCGTGTAGGCGACCCGGTCACCCGGCGCGCCGATGTGCGCATCCTGGCGGCCACCAACCTGAACCTGGAAGACA
TGGTGCGCGACGGCCGCTTCCGGGAAGACTTGCTCTACCGCCTCAATGTCATCACCTTGCACCTGCCGCCGCTGCGTGAA
CGCAGTGAGGACATCCTGACCCTTGCCGACCGCTTCCTGGCACGCTTCGTCAAGGAATACGCCCGACCGGCACGCGGTTT
CAGCGACAGCGCGCGTGAAGCGCTGCTCAACTACCGATGGCCAGGCAATATCCGCGAACTGCGGAACGTGGTGGAACGCG
CCAGCATCATCTGCCCACAGGAAAAGGTTGAAATCAGCCACCTCGGGATGGCCGAACAACCGACCAACAATGCCCCGCGC
ATCGGCGCAGCACTGAGCCTGGATGAGCTGGAGAAAGCGCATATCGGTGCAGTACTCGCCACCAGCGACACGTTGGATCA
AGCGGCACGCACCCTCGGCATCGACGCATCGACCCTTTATCGCAAACGCAAACAGTACAATTTATGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(406-446)

Sigma-54 interaction domain (Sigma54_activat)

(149-313)

Response regulator receiver domain (Response_reg)

(11-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

37.832

100

0.382
  pilR Pseudomonas aeruginosa PAK

41.791

89.732

0.375