Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NUW85_RS03620 Genome accession   NZ_CP102603
Coordinates   833413..834192 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 828413..839192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS03590 (NUW85_03590) fliH 828457..829212 (-) 756 WP_003154255.1 flagellar assembly protein FliH -
  NUW85_RS03595 (NUW85_03595) fliG 829205..830221 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NUW85_RS03600 (NUW85_03600) fliF 830234..831844 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  NUW85_RS03605 (NUW85_03605) fliE 831887..832207 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NUW85_RS03610 (NUW85_03610) flgC 832218..832670 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  NUW85_RS03615 (NUW85_03615) flgB 832670..833059 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NUW85_RS03620 (NUW85_03620) codY 833413..834192 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NUW85_RS03625 (NUW85_03625) hslU 834230..835633 (-) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  NUW85_RS03630 (NUW85_03630) hslV 835650..836195 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NUW85_RS03635 (NUW85_03635) xerC 836211..837128 (-) 918 WP_043867088.1 tyrosine recombinase XerC -
  NUW85_RS03640 (NUW85_03640) trmFO 837198..838505 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=718018 NUW85_RS03620 WP_003154263.1 833413..834192(-) (codY) [Bacillus amyloliquefaciens strain MBLB0692]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=718018 NUW85_RS03620 WP_003154263.1 833413..834192(-) (codY) [Bacillus amyloliquefaciens strain MBLB0692]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471