Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PSH15_RS27250 Genome accession   NZ_CP117300
Coordinates   5714385..5714810 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 0201761-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5709385..5719810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH15_RS27235 (PSH15_27235) pilX 5709949..5710536 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PSH15_RS27240 (PSH15_27240) pilY1 5710548..5714039 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PSH15_RS27245 (PSH15_27245) pilY2 5714041..5714388 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PSH15_RS27250 (PSH15_27250) comF 5714385..5714810 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PSH15_RS27255 (PSH15_27255) ispH 5714857..5715801 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PSH15_RS27260 (PSH15_27260) fkpB 5715887..5716327 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PSH15_RS27265 (PSH15_27265) lspA 5716320..5716829 (-) 510 WP_003102615.1 signal peptidase II -
  PSH15_RS27270 (PSH15_27270) ileS 5716822..5719653 (-) 2832 WP_003119417.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=717952 PSH15_RS27250 WP_003094721.1 5714385..5714810(+) (comF) [Pseudomonas aeruginosa strain 0201761-1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=717952 PSH15_RS27250 WP_003094721.1 5714385..5714810(+) (comF) [Pseudomonas aeruginosa strain 0201761-1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383