Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NQZ71_RS07845 Genome accession   NZ_CP102589
Coordinates   1612222..1614639 (+) Length   805 a.a.
NCBI ID   WP_317011625.1    Uniprot ID   -
Organism   Niallia taxi strain NBC_Nia     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1607222..1619639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ71_RS07820 (NQZ71_07840) - 1607855..1608541 (+) 687 WP_144452557.1 YitT family protein -
  NQZ71_RS07825 (NQZ71_07845) cymR 1608538..1608957 (+) 420 WP_127737346.1 cysteine metabolism transcriptional regulator CymR -
  NQZ71_RS07830 (NQZ71_07850) - 1609055..1610200 (+) 1146 WP_144453355.1 cysteine desulfurase family protein -
  NQZ71_RS07835 (NQZ71_07855) mnmA 1610264..1611379 (+) 1116 WP_144452558.1 tRNA 2-thiouridine(34) synthase MnmA -
  NQZ71_RS07840 (NQZ71_07860) - 1611537..1612184 (+) 648 WP_144452559.1 tetratricopeptide repeat protein -
  NQZ71_RS07845 (NQZ71_07865) recD2 1612222..1614639 (+) 2418 WP_317011625.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NQZ71_RS07850 (NQZ71_07870) - 1614871..1615059 (+) 189 WP_127737350.1 hypothetical protein -
  NQZ71_RS07855 (NQZ71_07875) - 1615158..1616237 (+) 1080 WP_144452561.1 AI-2E family transporter -
  NQZ71_RS07860 (NQZ71_07880) alaS 1616598..1619231 (+) 2634 WP_317011626.1 alanine--tRNA ligase -
  NQZ71_RS07865 (NQZ71_07885) - 1619302..1619568 (+) 267 WP_127737353.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 90666.39 Da        Isoelectric Point: 4.6730

>NTDB_id=717932 NQZ71_RS07845 WP_317011625.1 1612222..1614639(+) (recD2) [Niallia taxi strain NBC_Nia]
MEEQNSLDLFAEQGKYLKGRHLVTIFHNEENLYTVLRIRVDETNDNYEDKEAVVTGYLPKMHENDTYTFFGEFKDHPRFG
LQFQVSSFRKEMPQTKQGVITYLSSELFKGIGQKTAENIVESLGENAIAKILNEPSLLDSVPKLPPDKAKALYDTLMQNQ
GLEQAMISLNQYGFGPQLSMKIYQTYKDNTLEIIQSNPYKLVEDVEGIGFGRADDLGSQIGLVGGHPDRIKAGCLYVLEL
GSSQEGHVYLEAEYVLNRVKDLLEENKQEQIEFSAIANQIVLLEEEKKIIVEDKKIFLPSLYYSEKGVVRHIKRIMEQKE
YEDQFPESEFLLALGNLEDRLGVQYAPSQREAIQTALMSPMLMLTGGPGTGKTTVIKGIVELYGELHGYSLDPKEYKKEE
PFPFILAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSGGFDKDEENPLDGKIIIVDETSMVDIWLAFQLFKALPSNIQLI
LVGDEDQLPSVGPGQVLKDLLASACIPTVRLSDIYRQSEGSSIIELAHEIKGGRLPANLMQQQKDRSFIKCSSGQIAQAI
EKVVLNAKNKGYAPMDIQVLAPMYRGPAGIDRLNVILQEILNPNPDGTRKELKFGDVKYRIGDKVLQLVNQPENNVYNGD
MGEIVSIFYAKENTEKQDMVIVSFDGIEATYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGIT
RSKQFLILLGEVDAMEIGVGRNDELNRQTSLQEKLKEIFSTDIATGEEDAEVSLFYSERITEIDPLIGMENISPYDFMEQ
TDTKQ

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=717932 NQZ71_RS07845 WP_317011625.1 1612222..1614639(+) (recD2) [Niallia taxi strain NBC_Nia]
TTGGAAGAGCAAAATTCACTGGATCTGTTCGCAGAACAAGGCAAATACTTGAAAGGACGCCATCTTGTTACTATTTTTCA
TAATGAAGAAAACCTTTATACTGTGCTGAGAATAAGGGTGGATGAAACAAATGATAATTATGAAGATAAGGAAGCGGTTG
TCACTGGGTATTTGCCAAAGATGCATGAGAATGATACATACACATTCTTTGGTGAATTTAAAGACCATCCTCGATTTGGA
CTGCAGTTCCAGGTTTCCTCTTTCCGTAAAGAGATGCCACAGACTAAACAAGGCGTTATTACTTATTTGTCGAGTGAGCT
GTTTAAAGGAATCGGCCAAAAAACAGCAGAAAATATTGTAGAGTCTTTAGGAGAAAATGCCATCGCAAAAATCTTAAATG
AACCATCCCTGTTAGACTCTGTTCCAAAACTTCCTCCGGACAAGGCAAAAGCACTTTATGATACGCTTATGCAAAACCAA
GGGCTGGAGCAAGCGATGATTTCATTAAACCAATATGGTTTTGGGCCACAGCTTTCCATGAAGATTTATCAGACATATAA
GGACAATACGCTGGAAATTATCCAGTCTAATCCATATAAATTGGTCGAGGATGTGGAAGGGATTGGTTTTGGCAGAGCAG
ATGATTTAGGGTCACAAATCGGGCTTGTCGGGGGCCATCCTGACAGAATCAAAGCAGGCTGTTTATATGTATTGGAGCTT
GGTAGCAGCCAGGAAGGTCATGTTTATCTGGAAGCAGAATATGTGCTAAACAGGGTTAAGGATCTTTTAGAGGAAAATAA
GCAAGAGCAGATTGAGTTTTCCGCCATTGCCAATCAGATTGTTCTGCTGGAGGAAGAAAAGAAAATCATTGTCGAGGACA
AGAAAATTTTCCTGCCATCACTCTATTATTCGGAAAAAGGCGTTGTTCGCCATATCAAAAGAATTATGGAGCAAAAGGAA
TATGAAGACCAATTTCCGGAATCTGAATTTTTGCTTGCTTTAGGAAATTTAGAGGACAGGCTTGGCGTTCAATATGCTCC
CTCGCAAAGAGAAGCAATTCAGACTGCTCTCATGTCGCCGATGCTTATGCTGACTGGCGGACCAGGGACTGGGAAAACAA
CCGTTATTAAAGGGATTGTAGAGCTTTACGGTGAGCTGCATGGCTACAGTCTTGATCCGAAAGAGTATAAAAAGGAGGAG
CCTTTTCCATTTATCCTAGCAGCACCGACAGGAAGAGCTGCTAAACGGATGGCAGAATCGACAGGTCTTCCTGCTGTCAC
GATTCACCGTCTTTTAGGCTGGAATGGCAGTGGAGGCTTTGATAAGGATGAGGAAAATCCTCTTGATGGCAAGATAATCA
TTGTTGATGAAACCTCAATGGTAGACATTTGGCTCGCCTTTCAGCTGTTTAAAGCATTGCCCTCTAATATACAATTAATC
CTTGTTGGAGATGAGGACCAGCTTCCGTCAGTAGGGCCGGGACAAGTTCTAAAGGACTTGCTTGCATCTGCCTGCATTCC
GACAGTTCGCCTTTCAGATATATACAGACAAAGTGAGGGCTCCTCTATCATTGAACTTGCTCATGAGATAAAAGGCGGCA
GGCTTCCTGCTAATTTAATGCAGCAGCAAAAAGACAGATCTTTTATTAAGTGTTCTTCAGGACAAATAGCTCAAGCAATT
GAAAAGGTCGTCCTTAATGCAAAGAATAAGGGTTATGCGCCAATGGATATTCAAGTTCTTGCTCCCATGTACAGAGGACC
AGCTGGAATTGACCGTCTAAATGTGATCCTCCAGGAAATATTGAATCCCAATCCAGACGGAACAAGGAAGGAACTAAAGT
TCGGAGACGTTAAATACCGGATTGGTGATAAAGTGCTTCAGCTAGTCAATCAGCCTGAAAACAATGTTTATAATGGGGAC
ATGGGAGAAATCGTCTCGATTTTTTATGCGAAGGAAAACACCGAAAAACAAGACATGGTTATCGTCTCCTTTGATGGAAT
TGAAGCAACGTACACAAGGCAGGATTTGAACCAAATAACCCATGCTTACTGCTGTTCTGTTCATAAGTCACAAGGAAGTG
AATTTCCGATTGTAATAATGCCGATTGTTAAAAGCTACTATAGAATGCTGCGCAGAAACCTAATCTATACAGGTATTACA
AGAAGTAAACAATTTTTGATTTTGCTTGGCGAAGTGGACGCTATGGAAATTGGCGTTGGCCGCAATGATGAGTTAAACAG
GCAGACCTCCTTGCAGGAAAAACTGAAAGAGATTTTTTCAACGGATATAGCAACAGGTGAGGAAGATGCAGAGGTTTCTC
TTTTCTACAGTGAGCGAATTACAGAAATTGACCCGCTTATCGGCATGGAAAATATATCACCTTATGATTTTATGGAGCAA
ACAGACACGAAACAATAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-728)

AAA domain (AAA_30)

(345-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.672

99.503

0.624