Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NQZ71_RS07735 Genome accession   NZ_CP102589
Coordinates   1587362..1589725 (+) Length   787 a.a.
NCBI ID   WP_144456640.1    Uniprot ID   -
Organism   Niallia taxi strain NBC_Nia     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582362..1594725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ71_RS07720 (NQZ71_07740) - 1583958..1584257 (+) 300 WP_127737326.1 post-transcriptional regulator -
  NQZ71_RS07725 (NQZ71_07745) secDF 1584518..1586770 (+) 2253 WP_260053775.1 protein translocase subunit SecDF -
  NQZ71_RS07730 (NQZ71_07750) - 1586899..1587222 (+) 324 WP_144456340.1 lipopolysaccharide assembly LapA domain-containing protein -
  NQZ71_RS07735 (NQZ71_07755) recJ 1587362..1589725 (+) 2364 WP_144456640.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NQZ71_RS07740 (NQZ71_07760) - 1589716..1590228 (+) 513 WP_127737330.1 adenine phosphoribosyltransferase -
  NQZ71_RS07745 (NQZ71_07765) - 1590529..1592724 (+) 2196 WP_144456338.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NQZ71_RS07750 (NQZ71_07770) dtd 1592736..1593176 (+) 441 WP_317011614.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88503.10 Da        Isoelectric Point: 4.8134

>NTDB_id=717931 NQZ71_RS07735 WP_144456640.1 1587362..1589725(+) (recJ) [Niallia taxi strain NBC_Nia]
MLHSKTRWIVEDKDKKDAAILADQLKITPLVASLLVNRGYDNREKAENFLYSIDNFHDPFLMKGMDIAVKRIKEAIEKRE
PILIFGDYDADGVTSTTVMMKTLQDMGADVQFYIPNRFTEGYGPNEGAFRYASSIGIKLIITVDTGIAAVKEADVAKELG
IDYIVTDHHEPGPVLPDAMAIIHPRLEGSDYPFHELAGVGVALKVAHALYGELPEQLLQFAAIGTIADLVSLTGENRAIA
KLGIKKLKQTTNTGLKALLKQMNTEASGIDEETIGFMIAPRINAVGRLDSADPAVELLLTDDPDIAASLAEEMEATNKER
QAIVNQITEEAMEQVESLYPLKDNRVLIVGKEGWNPGVVGIVASRLVEKYYRPTIVLGFDQEKGIAKGSARSIAGFDLYQ
NLSTCRELLPHFGGHPMAAGMTLASEDVEELRERLNSLAFEQLKPEDLIPLTAVDMKIDLKEAHLSAIEEMQLLAPFGVD
NAKPRILIEHVEIGTIRKIGANQNHLKLQFVKEESNLDGIGFGIGELYDHISPSAKLSVLGQLSINEWNNIKKPQIFIQD
IAVNHWQLFDYRGIRNMEKLEAAIPADSATWIFFNKESVTEELVKLIKDYKIIENLDDAASFQTDNRILVLADFPSNKEI
VQQLLSSSAPERIYASFYKQDSDFFSTMPTRDHFKWFYSFLAKQNGFDLKRYGGELAKRQGWSKETIVFMSKVFFELNFV
TMKDGFISLNKNSNRRDLTESPSFQQKQAQFSLENELIYSSYEQLKNWFDLILQKSVKNEEEVQEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=717931 NQZ71_RS07735 WP_144456640.1 1587362..1589725(+) (recJ) [Niallia taxi strain NBC_Nia]
ATGCTGCATTCAAAAACTAGATGGATTGTAGAAGACAAAGATAAGAAAGATGCTGCAATACTTGCAGACCAGTTGAAAAT
CACACCTCTTGTAGCAAGTTTACTAGTAAACAGAGGATATGATAACCGCGAAAAAGCGGAGAATTTTTTATACAGCATAG
ACAATTTTCATGACCCATTCCTAATGAAGGGGATGGATATAGCAGTCAAACGAATAAAGGAAGCAATAGAAAAAAGGGAA
CCAATCCTCATCTTTGGTGATTACGATGCGGATGGTGTAACAAGCACTACGGTCATGATGAAAACGTTGCAGGATATGGG
AGCAGATGTGCAATTTTATATCCCCAACCGTTTCACAGAAGGCTATGGTCCTAATGAAGGGGCATTCCGGTATGCCTCAA
GTATTGGTATTAAGCTGATTATAACAGTGGATACTGGCATAGCAGCAGTAAAGGAAGCAGATGTTGCTAAAGAGCTAGGA
ATTGATTATATCGTAACAGATCACCATGAACCAGGTCCTGTGCTGCCTGATGCAATGGCCATTATTCATCCAAGACTTGA
AGGAAGTGACTATCCGTTTCATGAGCTTGCAGGTGTTGGTGTTGCTTTAAAGGTTGCTCATGCACTGTACGGAGAGCTTC
CTGAACAGCTTCTGCAATTTGCTGCTATTGGAACGATTGCCGATCTTGTTTCTCTGACAGGGGAAAACAGAGCTATTGCA
AAGCTTGGAATTAAAAAGTTGAAGCAAACAACTAATACTGGCTTGAAGGCACTACTGAAGCAGATGAATACAGAAGCAAG
TGGGATAGATGAAGAAACAATCGGCTTTATGATTGCGCCGCGCATTAATGCAGTCGGCAGATTAGACAGTGCAGATCCTG
CAGTTGAGCTGCTGTTAACAGATGACCCTGACATTGCTGCATCTCTTGCTGAAGAGATGGAAGCGACAAATAAGGAAAGA
CAAGCAATTGTTAACCAAATTACCGAAGAAGCGATGGAACAGGTAGAATCCTTATATCCGCTCAAAGATAACAGGGTGCT
TATCGTTGGGAAAGAGGGCTGGAATCCTGGCGTAGTTGGTATTGTTGCTTCAAGACTTGTAGAGAAGTACTACAGGCCGA
CAATCGTGCTTGGTTTTGACCAGGAAAAAGGAATTGCAAAAGGATCTGCACGCAGTATTGCCGGTTTTGATTTGTATCAG
AATCTGTCAACGTGCAGGGAGCTTCTGCCTCACTTCGGAGGACATCCAATGGCTGCGGGTATGACATTAGCGAGTGAGGA
TGTGGAGGAGCTCAGAGAACGTCTCAATAGTCTTGCATTTGAACAGCTTAAGCCGGAAGATTTAATTCCACTCACAGCGG
TTGATATGAAAATTGACTTAAAGGAGGCCCATTTAAGTGCAATTGAAGAAATGCAGCTGCTTGCGCCATTTGGGGTTGAT
AATGCCAAGCCGCGTATTTTGATTGAGCATGTTGAAATTGGCACAATAAGAAAAATAGGGGCAAACCAAAATCATCTTAA
GCTGCAATTTGTCAAGGAAGAAAGCAACCTGGATGGCATTGGCTTTGGAATCGGTGAACTATATGACCATATATCACCAA
GTGCAAAGCTTTCTGTATTAGGACAGCTTTCCATTAACGAATGGAATAATATTAAAAAACCGCAAATATTCATCCAGGAT
ATTGCTGTAAATCATTGGCAGCTTTTTGATTATCGGGGAATTCGTAATATGGAGAAGCTTGAAGCGGCCATTCCGGCAGA
TAGTGCGACATGGATTTTCTTTAATAAAGAGTCTGTAACAGAGGAATTGGTAAAGCTAATCAAGGATTATAAAATAATCG
AAAATCTTGATGACGCAGCATCCTTTCAAACAGATAATCGCATACTAGTATTGGCAGACTTTCCGAGCAATAAAGAGATT
GTACAGCAATTATTATCAAGCTCTGCTCCAGAGCGGATTTATGCAAGCTTTTATAAGCAGGATAGCGACTTTTTCAGCAC
AATGCCGACAAGGGATCATTTCAAATGGTTTTATTCCTTTCTTGCCAAACAAAATGGTTTTGACCTTAAAAGATATGGTG
GAGAGCTGGCAAAACGGCAAGGTTGGAGTAAAGAAACAATTGTTTTTATGTCAAAGGTGTTTTTTGAGCTGAATTTTGTT
ACAATGAAGGATGGGTTTATTTCGCTGAATAAGAATAGCAATAGAAGGGATTTAACAGAGTCTCCTTCTTTTCAACAGAA
ACAAGCACAATTTTCGCTCGAAAATGAATTAATATACTCGTCTTATGAGCAATTAAAGAATTGGTTTGATCTTATTCTTC
AGAAATCCGTTAAGAATGAGGAGGAAGTGCAAGAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-225)

DHHA1 domain (DHHA1)

(314-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

RecJ OB domain (RecJ_OB)

(454-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.282

98.729

0.526