Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   NUU05_RS09465 Genome accession   NZ_CP102538
Coordinates   1812420..1813358 (-) Length   312 a.a.
NCBI ID   WP_011680672.1    Uniprot ID   A0A0E2Q3C4
Organism   Streptococcus thermophilus strain TH-4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807420..1818358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS09440 (NUU05_09405) - 1807982..1808425 (-) 444 WP_014607905.1 zinc-dependent MarR family transcriptional regulator -
  NUU05_RS09445 (NUU05_09410) - 1808531..1809763 (-) 1233 WP_041827633.1 peptidase -
  NUU05_RS09450 (NUU05_09415) dusB 1810027..1811004 (-) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  NUU05_RS09455 (NUU05_09420) hslO 1810997..1811863 (-) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  NUU05_RS09460 (NUU05_09425) - 1812010..1812198 (-) 189 WP_011225379.1 hypothetical protein -
  NUU05_RS09465 (NUU05_09430) amiF 1812420..1813358 (-) 939 WP_011680672.1 ABC transporter ATP-binding protein Regulator
  NUU05_RS09470 (NUU05_09435) - 1813360..1814402 (-) 1043 Protein_1800 ABC transporter ATP-binding protein -
  NUU05_RS09475 (NUU05_09440) - 1814416..1815449 (-) 1034 Protein_1801 ABC transporter permease -
  NUU05_RS09480 (NUU05_09445) - 1815460..1815678 (-) 219 Protein_1802 ABC transporter permease subunit -
  NUU05_RS09485 (NUU05_09450) - 1815686..1816694 (-) 1009 Protein_1803 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35353.03 Da        Isoelectric Point: 6.1917

>NTDB_id=717659 NUU05_RS09465 WP_011680672.1 1812420..1813358(-) (amiF) [Streptococcus thermophilus strain TH-4]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRFVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKIDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSIVKYISDRIGAMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYTTVAEAKNYKEEVKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=717659 NUU05_RS09465 WP_011680672.1 1812420..1813358(-) (amiF) [Streptococcus thermophilus strain TH-4]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATTTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGATAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCCCATGAGTTTTCTGGTGGTCAACGTCAA
AGGATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATTGTTAAATATATATCCGATCGTATTGGTGCAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATACTACAGTAGCAGAGGCTAAAAATTATAAAGAAGAAGTCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2Q3C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.115

97.756

0.519
  amiF Streptococcus thermophilus LMG 18311

52.787

97.756

0.516
  amiF Streptococcus salivarius strain HSISS4

52.459

97.756

0.513