Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   MGCS36083_RS09455 Genome accession   NZ_CP117285
Coordinates   1902759..1905212 (+) Length   817 a.a.
NCBI ID   WP_084916724.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897759..1910212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36083_RS09435 (MGCS36083_03830) - 1900172..1900717 (-) 546 WP_003056838.1 CvpA family protein -
  MGCS36083_RS09440 (MGCS36083_03832) - 1900720..1901028 (-) 309 WP_003052702.1 hypothetical protein -
  MGCS36083_RS09445 (MGCS36083_03834) rnhC 1901185..1902084 (+) 900 WP_046165970.1 ribonuclease HIII -
  MGCS36083_RS09450 (MGCS36083_03836) lepB 1902106..1902699 (+) 594 WP_014612577.1 signal peptidase I -
  MGCS36083_RS09455 (MGCS36083_03838) recD/recD2/recDB 1902759..1905212 (+) 2454 WP_084916724.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MGCS36083_RS09460 (MGCS36083_03840) - 1905303..1905791 (+) 489 WP_084916723.1 hypothetical protein -
  MGCS36083_RS09465 (MGCS36083_03842) dinB 1905880..1906977 (-) 1098 WP_003052709.1 DNA polymerase IV -
  MGCS36083_RS09470 (MGCS36083_03844) pflB 1907186..1909513 (+) 2328 WP_003056840.1 formate C-acetyltransferase -
  MGCS36083_RS09475 (MGCS36083_03846) - 1909618..1910070 (+) 453 WP_003056842.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 91213.07 Da        Isoelectric Point: 4.5762

>NTDB_id=717440 MGCS36083_RS09455 WP_084916724.1 1902759..1905212(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36083]
MEHFFTGTVDRIIFENAANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKVK
PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG
LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESVSRGDTYVQAR
QLLDFAITLLEDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIAKNISRLLDTPLSQSFSHDTIQTTI
QAVQEDFAITYDQVQQEAIAKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLAAISSTTQVIIVGDSDQLPSVGPGQVLSDLL
KVNSLPQIALQKIFRQSQESTIVNLADQMRRGILAADFRDKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQELLNPLQGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEFAAFDYAIKNEG
DKRQTYLVERFQEQSDLASSQPNQELKSKEQTSLFSNTAALEDDSQKSSSQSTNSNPTENSQSDNDDFRLTPENYSTIDS
MIGLTESDVALFFQKKS

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=717440 MGCS36083_RS09455 WP_084916724.1 1902759..1905212(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36083]
ATGGAACACTTTTTTACTGGTACTGTTGACCGCATTATCTTTGAAAATGCAGCTAATTTTTTTAAAATTCTCCTCCTTGC
CATCGAAGACACAGATAGTGATATTGACGACTTTGAAATCATTATCACAGGGACGATGGCTGACATTATTGAAGGAGATG
ACTACACCTTTTGGGGGGAATTGACCCAGCACCCTAAATATGGACAGCAACTCAAACTAAGCCGTTACCAAAAAGTCAAA
CCTAGTTCATCTGGTTTGGTTAATTATTTCTCCAGCGACCATTTTAAGGGGATTGGAAAGAAAACAGCGGAGAAAATCAT
TGCCCTCTATGGCAATAATACTATTGACCATATTTTAGAAGACCCAAGTAAATTAGAAACTATTTCTGGTCTGTCCAAAG
CTAATCGTCAAGCCTTTGTCGCTAAACTGAAATTGAATTATGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTTGGC
CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGAGAAGTACAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA
ATTAGTCGAAGATCTACAAGGTTTTGGGTTTAAGATGGCAGATGCTCTCGCTGAAAACTTAGGGATTGAGAGCGACTCTC
CAAAACGTTTTCGTGCTGCCCTCCTGCACTGCCTCTTGGAAGAATCCGTCAGTCGAGGAGACACTTATGTCCAAGCACGA
CAATTATTAGACTTTGCCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGATCCTGCTGCTGTGGCTGAGCAACT
AAGCGAGTTAATCATAGAGGGCAAAATCAAAAACAGTGACACCAAACTGTTTGATGCTAGCCTTTATTTTGCTGAAGAGG
GGATTGCTAAGAATATCTCTCGTCTCTTAGATACCCCTTTAAGTCAGTCATTTAGTCATGATACCATCCAAACAACCATC
CAAGCCGTTCAAGAAGACTTTGCTATCACTTATGACCAGGTGCAGCAAGAAGCCATTGCTAAAGCCTTAACCAGCAAGGT
ATTTCTCCTAACAGGTGGTCCCGGAACAGGGAAAACAACTGTTATTCGAGGCATTTTACAGGCTTACGCTAACCTGCATC
AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGGGCTGCACGTCGTATGAATGAGTTG
ACTGGACTTCCTAGCGCAACCATCCACAGGCACTTAGGCCTCAACGGCGACAACGATTACCAAGCCATGGAAGATTATCT
AGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCCAACCAATTGTTAGCAGCGATTAGTT
CAACAACTCAAGTAATTATTGTCGGAGATAGTGACCAGCTTCCTTCGGTTGGACCCGGTCAAGTCCTGTCAGATCTTTTA
AAAGTCAATAGCCTGCCCCAAATCGCCTTGCAAAAGATATTTCGTCAATCCCAGGAATCTACTATTGTCAATTTGGCAGA
CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGATAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCAGCCT
TTATCCCTGACATGATTCAAAAAATTGTCCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGGAAATTCAAATTTTAGCA
CCTATGTACAAAGGACAAGCTGGCATCAATCATCTTAATCAACTCATGCAAGAACTTCTCAATCCCTTGCAAGGACAAAC
AGAATTTCTGTTCAATGATACGCATTTTCGTAAAGGTGATAAAGTCCTGCACTTAGTCAACGATGCTCAGTTGAATGTCT
TTAACGGGGATATTGGTTATATTACAGATTTGATTCCTGCTAAATACACCGAATCTAAGCAAGACGAATTAATCTTAGAT
TTTGACGGTAGCGAAGTAACGTATCCTAGAAATGAATGGCTAAAATTAACCTTAGCCTATGCCATGAGCATTCATAAGTC
ACAAGGGAGCGAGTTTCAAGTGGTGATTTTACCCATCACACGCCAAAGCGGCCGACTTTTGCAACGAAATTTAATTTATA
CTGCTATCACCCGTTCTAAAAGTAAGTTGATTATGCTAGGTGAATTTGCAGCCTTTGACTATGCTATTAAAAATGAAGGG
GATAAACGGCAAACTTATTTAGTGGAACGTTTCCAAGAACAATCCGACTTAGCCTCCTCTCAACCTAACCAAGAGCTAAA
ATCAAAAGAGCAGACCTCCCTTTTTTCTAATACGGCAGCCCTTGAGGACGACTCTCAAAAATCTTCCTCTCAATCAACAA
ACTCTAACCCCACTGAGAACTCTCAGTCAGATAATGATGATTTTAGGTTAACACCTGAGAATTATTCGACTATCGATTCG
ATGATAGGGCTTACAGAATCAGATGTTGCCCTCTTTTTCCAGAAAAAATCCTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

AAA domain (AAA_30)

(331-522)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.175

92.289

0.389