Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NUU06_RS08740 Genome accession   NZ_CP102519
Coordinates   1773144..1773974 (-) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain SS-258     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1768144..1778974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU06_RS08720 (NUU06_08760) - 1769274..1770230 (+) 957 WP_034982426.1 DhaKLM operon coactivator DhaQ -
  NUU06_RS08725 (NUU06_08765) dhaS 1770231..1770755 (-) 525 WP_003704309.1 dihydroxyacetone kinase transcriptional activator DhaS -
  NUU06_RS08730 (NUU06_08770) brnQ 1770901..1772283 (-) 1383 WP_003702059.1 branched-chain amino acid transport system II carrier protein -
  NUU06_RS08735 (NUU06_08775) - 1772823..1773032 (+) 210 WP_044005512.1 hypothetical protein -
  NUU06_RS08740 (NUU06_08780) endA 1773144..1773974 (-) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  NUU06_RS08745 (NUU06_08785) - 1774343..1774945 (+) 603 WP_003701011.1 nitroreductase family protein -
  NUU06_RS08750 (NUU06_08790) - 1774998..1776929 (-) 1932 WP_034982425.1 heavy metal translocating P-type ATPase -
  NUU06_RS08755 (NUU06_08795) - 1777079..1777393 (+) 315 WP_034982423.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=717425 NUU06_RS08740 WP_003709392.1 1773144..1773974(-) (endA) [Ligilactobacillus salivarius strain SS-258]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=717425 NUU06_RS08740 WP_003709392.1 1773144..1773974(-) (endA) [Ligilactobacillus salivarius strain SS-258]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGGCGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACCTGCCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCCCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489