Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NRE15_RS06770 Genome accession   NZ_CP102453
Coordinates   1503510..1505267 (-) Length   585 a.a.
NCBI ID   WP_313794832.1    Uniprot ID   -
Organism   Fundicoccus culcitae strain DM20194951     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1495189..1506638 1503510..1505267 within 0


Gene organization within MGE regions


Location: 1495189..1506638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRE15_RS06730 (NRE15_06745) - 1495349..1495597 (+) 249 WP_313794826.1 hypothetical protein -
  NRE15_RS06735 (NRE15_06750) tnpC 1495656..1497347 (-) 1692 WP_313794781.1 IS66 family transposase -
  NRE15_RS06740 (NRE15_06755) tnpB 1497452..1497796 (-) 345 WP_313794782.1 IS66 family insertion sequence element accessory protein TnpB -
  NRE15_RS06745 (NRE15_06760) - 1497876..1498019 (-) 144 WP_313794827.1 hypothetical protein -
  NRE15_RS06750 (NRE15_06765) - 1498228..1499118 (+) 891 WP_313794828.1 SDR family oxidoreductase -
  NRE15_RS06755 (NRE15_06770) - 1499190..1499957 (-) 768 WP_313794829.1 D-alanyl-D-alanine carboxypeptidase family protein -
  NRE15_RS06760 (NRE15_06775) - 1499979..1500542 (-) 564 WP_313794830.1 GNAT family N-acetyltransferase -
  NRE15_RS06765 (NRE15_06780) rcrQ 1501657..1503453 (-) 1797 WP_390887196.1 ABC transporter ATP-binding protein Regulator
  NRE15_RS06770 (NRE15_06785) rcrP 1503510..1505267 (-) 1758 WP_313794832.1 ABC transporter ATP-binding protein Regulator
  NRE15_RS06775 (NRE15_06790) - 1505457..1506638 (-) 1182 WP_313794833.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64935.95 Da        Isoelectric Point: 4.6893

>NTDB_id=717094 NRE15_RS06770 WP_313794832.1 1503510..1505267(-) (rcrP) [Fundicoccus culcitae strain DM20194951]
MLKLFKQLSKMDFFLAFISLLLIILQVWLDLRLPDYMSEITMLVQTEGSQMSDIYAAGGSMIAVAFASLLTAVVIAVIAA
KISANFSANTRERLYDKVQSFSLEEIKRFSTSSLITRTTNDVTQVQMLIVMGLQVMIKAPIMGVWAITKIAGKNWEWSAA
TAVAVIFLMLVVGTAIALATPKFKILQKLTDRLNAVTRENITGLRVIRAYNAEDYQQEKFENVNEELTNTNLFTSRIMSL
LSPTIQLTMNGLSLAIYWIGAYLINQAGLMERVTLFSDMIVFSSYAMQVVMSFMMLIMIFIMVPRANVSAERILEVLETE
PTIIDGTLTTAPNDLKGQVEFKHVSFKYPDAEEYVIQDVSFKANQGETVAFIGSTGSGKSTLVNLVPRLYEATEGEVLVN
DVNVKDYTQEGLRNIMSYVSQKAVLFSGKIKDNIAYGENGRGPVSENDLVEAVYTAQASDFVEKLPDGYDSHVAQGGTNF
SGGQKQRLSIARAIARRPEIFIFDDSFSALDYKTDRALREALAKDCPDATKLIVAQRIGTIQDADKIIVMDQGRIVGDGT
HEELLASNEVYREIAYSQLSEEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=717094 NRE15_RS06770 WP_313794832.1 1503510..1505267(-) (rcrP) [Fundicoccus culcitae strain DM20194951]
GTGTTAAAACTTTTTAAACAATTGTCCAAAATGGATTTCTTTTTGGCATTTATCAGTTTGCTCTTAATTATCCTACAAGT
TTGGCTGGACCTACGCTTGCCGGACTACATGAGTGAAATTACCATGCTCGTACAAACGGAAGGCAGTCAAATGTCTGATA
TATATGCGGCTGGTGGCTCAATGATTGCCGTCGCATTTGCTAGTTTATTGACGGCCGTTGTGATTGCTGTCATTGCAGCG
AAAATTTCAGCCAATTTCAGTGCGAATACACGTGAACGCTTATATGATAAGGTTCAATCCTTTTCCTTGGAAGAAATTAA
ACGTTTCTCTACCTCGAGTTTAATTACACGGACAACCAATGATGTGACGCAAGTACAAATGTTAATTGTCATGGGTCTAC
AAGTGATGATAAAAGCACCGATTATGGGTGTCTGGGCGATTACCAAAATCGCTGGTAAAAACTGGGAATGGTCGGCAGCT
ACCGCTGTGGCAGTTATTTTCCTCATGCTGGTGGTTGGCACAGCTATTGCGCTCGCAACCCCTAAATTCAAAATTTTACA
AAAGCTAACGGACCGCTTGAATGCAGTCACCCGTGAAAATATCACTGGTTTACGCGTTATTCGTGCCTATAATGCCGAAG
ATTACCAACAAGAGAAATTTGAAAATGTAAATGAGGAACTGACAAATACCAACTTATTTACCAGTCGTATTATGTCACTC
TTGAGCCCAACCATCCAACTAACCATGAATGGCTTATCCTTAGCGATTTATTGGATTGGGGCGTATTTAATTAATCAAGC
GGGCTTGATGGAACGTGTGACGTTGTTTTCGGATATGATTGTCTTTTCTTCCTATGCAATGCAAGTCGTGATGTCCTTTA
TGATGTTAATCATGATCTTTATTATGGTGCCACGGGCCAATGTTTCGGCGGAACGGATTTTAGAAGTACTCGAAACAGAA
CCGACGATTATCGACGGCACTTTAACGACAGCACCGAATGATCTAAAAGGGCAAGTGGAATTTAAACATGTTAGTTTTAA
ATACCCCGATGCTGAGGAATATGTCATTCAAGATGTTAGTTTTAAAGCGAATCAAGGTGAAACAGTTGCATTTATTGGGT
CGACAGGATCGGGTAAAAGTACACTGGTGAACCTAGTGCCGCGTTTATATGAAGCGACTGAAGGGGAAGTATTGGTTAAC
GATGTGAATGTTAAAGACTACACCCAAGAAGGACTTAGAAATATCATGTCCTACGTTTCGCAAAAAGCGGTTTTGTTTTC
GGGAAAGATTAAAGATAATATCGCTTATGGTGAAAATGGCCGTGGTCCTGTTTCTGAAAATGATTTAGTTGAAGCGGTCT
ATACGGCGCAAGCAAGTGATTTTGTTGAAAAACTGCCGGATGGTTATGATAGTCATGTCGCTCAAGGAGGCACCAACTTT
TCGGGCGGGCAAAAACAACGGCTTTCCATTGCACGTGCGATCGCCCGAAGACCAGAGATATTTATTTTCGATGATAGTTT
TTCGGCTTTGGACTATAAAACGGATCGGGCTTTAAGAGAGGCGCTGGCTAAGGATTGTCCGGATGCGACGAAGTTAATTG
TGGCGCAACGGATTGGGACGATTCAGGATGCGGATAAAATTATTGTGATGGATCAGGGGCGGATTGTCGGTGACGGGACG
CATGAGGAGTTGTTGGCGTCCAATGAGGTTTACCGGGAAATTGCCTATTCACAACTTTCAGAAGAGGAGTTGGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.02

100

0.54