Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NR793_RS22915 Genome accession   NZ_CP102434
Coordinates   3119937..3120662 (+) Length   241 a.a.
NCBI ID   WP_069524213.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RMDVP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3114937..3125662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR793_RS22900 (NR793_22930) - 3116042..3118363 (+) 2322 WP_029855941.1 Tex family protein -
  NR793_RS22905 (NR793_22935) - 3118497..3118961 (-) 465 WP_005459035.1 hypothetical protein -
  NR793_RS22910 (NR793_22940) bioH 3119085..3119852 (-) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  NR793_RS22915 (NR793_22945) comF 3119937..3120662 (+) 726 WP_069524213.1 phosphoribosyltransferase family protein Machinery gene
  NR793_RS22920 (NR793_22950) nfuA 3120760..3121344 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  NR793_RS22925 (NR793_22955) nudE 3121565..3122131 (+) 567 WP_219208218.1 ADP compounds hydrolase NudE -
  NR793_RS22930 (NR793_22960) cysQ 3122173..3123000 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NR793_RS22935 (NR793_22965) - 3123287..3124048 (-) 762 WP_218743568.1 type II secretion system protein N -
  NR793_RS22940 (NR793_22970) - 3124050..3124541 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27644.79 Da        Isoelectric Point: 8.7043

>NTDB_id=716987 NR793_RS22915 WP_069524213.1 3119937..3120662(+) (comF) [Vibrio parahaemolyticus strain RMDVP1]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQQ
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=716987 NR793_RS22915 WP_069524213.1 3119937..3120662(+) (comF) [Vibrio parahaemolyticus strain RMDVP1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACAA
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485