Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   PO908_RS09025 Genome accession   NZ_CP117042
Coordinates   1750481..1752835 (+) Length   784 a.a.
NCBI ID   WP_021002138.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1745481..1757835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS09005 (PO908_08970) - 1747653..1748201 (-) 549 WP_394467966.1 CvpA family protein -
  PO908_RS09010 (PO908_08975) - 1748198..1748503 (-) 306 WP_003026418.1 hypothetical protein -
  PO908_RS09015 (PO908_08980) rnhC 1748589..1749479 (+) 891 WP_021002136.1 ribonuclease HIII -
  PO908_RS09020 (PO908_08985) lepB 1749483..1750097 (+) 615 WP_021002137.1 signal peptidase I -
  PO908_RS09025 (PO908_08990) recD/recD2/recDB 1750481..1752835 (+) 2355 WP_021002138.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PO908_RS09030 (PO908_08995) - 1752906..1753304 (+) 399 Protein_1735 transposase -
  PO908_RS09035 (PO908_09000) - 1753627..1754316 (-) 690 WP_021002139.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  PO908_RS09040 (PO908_09005) - 1754568..1755584 (+) 1017 WP_021002140.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  PO908_RS09045 (PO908_09010) galU 1755612..1756511 (+) 900 WP_057489825.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PO908_RS09050 (PO908_09015) - 1757085..1757408 (-) 324 WP_003028637.1 AzlD domain-containing protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88497.66 Da        Isoelectric Point: 4.6963

>NTDB_id=716463 PO908_RS09025 WP_021002138.1 1750481..1752835(+) (recD/recD2/recDB) [Streptococcus anginosus strain CGMH_KH1]
MEFYFSGTIERIIFENPSSFFRILLLDINDTDADFDDFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNAIDKVLAEPEKLKNIAGLSAKNREAFLTKLRQNYGTERILAKLSEYG
IPNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPSSVADELAYLIEEDKVQNVDTKIFENSLFFAEEGIRSNLLRILEKGKQNKFEPEKIEAAI
TQIENEFAISYDVTQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLRKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVNLASQIQKGILPPDFIEKKADRSYFEARSEHILQMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAEKEQLVFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDSNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFDFAVKN
TGTARNTYLIQRFSDLLTDEKVIHTSVNNLETTVEKYILTEENFLKINPMIGITDEDIQSVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=716463 PO908_RS09025 WP_021002138.1 1750481..1752835(+) (recD/recD2/recDB) [Streptococcus anginosus strain CGMH_KH1]
ATGGAATTTTACTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTAACGACACCGATGCAGATTTTGATGATTTTGAGATTATTGTCACGGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTACACTTTTTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAACTCAAAATAACACGCTATGAGCGTGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACAGCGCAAAAAATCGT
GGATCTCTATGGCGACAACGCGATTGATAAAGTCTTAGCAGAGCCAGAAAAATTAAAGAATATTGCAGGTCTTTCTGCTA
AAAACCGTGAAGCCTTTCTCACAAAACTAAGACAAAATTACGGCACCGAGAGAATTCTTGCCAAGCTATCTGAATACGGT
ATCCCGAACAAGCTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
GTTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGTTTTCGTGCTGGGTTGCTTCACACGCTCCTAACCCAGTCTATGGAAAAAGGCGACACTTATCTTGAAGCCAAA
GAACTTCTAGAACATACGATTGAGCTCCTCGAAAGTTCCCGTCAGATTGAGTTAGACCCAAGTTCTGTTGCGGATGAGCT
GGCATATTTGATTGAAGAAGATAAAGTTCAAAATGTTGATACAAAGATTTTTGAAAACAGTCTCTTTTTTGCCGAAGAAG
GGATTCGTAGCAATCTCTTGCGCATTTTAGAAAAAGGGAAGCAAAACAAATTTGAACCGGAAAAAATCGAAGCTGCTATT
ACTCAAATCGAAAATGAGTTTGCCATTTCCTATGATGTGACTCAAAAACAAGCAATTTGTGACGCTATCAATCACAAAAT
TTTCATCCTAACGGGTGGTCCCGGAACAGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTATGCTCTGCTGCATG
GGTTGGATTTGCGCAAATCTCAAGATTTGCCTATTCTTCTAGCCGCTCCAACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCAACGATTCATCGGCATTTAGGCATGACAGGAGACGACGACACCAGCCATTTAGACGATTA
TTTGGACGCAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAATATCT
CTTCCAACAGCAAACTTCTCATTGTCGGAGATGCTGATCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCACAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGACTCCACTATCGTCAACTTAGC
CAGCCAGATTCAAAAAGGCATTCTGCCACCTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCGTAGTG
AACATATTCTGCAGATGATTGAACGTATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTACTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAAAAGA
ACAACTCGTCTTTGAAGCAACGGATTGCCAATACCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAGTA
ATGTCTTTAACGGCGATTTGGGTTATATCACTGATTTGCTGCCAGCCAAATATACTGATTCAAAACAGGACGAGTTGACT
ATCAACTTTGACAGCAATGAGATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTAGTCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGACTTTGCTGTCAAAAAC
ACTGGCACAGCTCGCAATACCTATCTAATCCAACGCTTTTCAGACCTCCTAACTGATGAAAAAGTTATACACACTTCTGT
GAATAATTTGGAAACAACTGTGGAAAAATATATCTTGACTGAGGAAAATTTCTTGAAAATCAACCCTATGATTGGAATAA
CGGATGAGGATATTCAAAGTGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(331-528)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.499

95.281

0.395