Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   PPK11_RS07380 Genome accession   NZ_CP117024
Coordinates   1530560..1531333 (-) Length   257 a.a.
NCBI ID   WP_273897630.1    Uniprot ID   -
Organism   Helicobacter pylori strain 444A6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525560..1536333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK11_RS07345 - 1525644..1526804 (+) 1161 WP_273897621.1 HP1165 family MFS efflux transporter -
  PPK11_RS07350 - 1526811..1527785 (-) 975 WP_273897622.1 NAD(P)-binding domain-containing protein -
  PPK11_RS07355 ccoS 1527811..1528002 (-) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  PPK11_RS07360 - 1528125..1528706 (+) 582 WP_273897628.1 DedA family protein -
  PPK11_RS07365 - 1528798..1529292 (+) 495 WP_000516067.1 flavodoxin -
  PPK11_RS07370 ybeY 1529346..1529768 (+) 423 WP_273897629.1 rRNA maturation RNase YbeY -
  PPK11_RS07375 fic 1530011..1530533 (-) 523 Protein_1434 protein adenylyltransferase Fic -
  PPK11_RS07380 proC 1530560..1531333 (-) 774 WP_273897630.1 pyrroline-5-carboxylate reductase Machinery gene
  PPK11_RS07385 hopL 1531346..1535038 (-) 3693 WP_273897631.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28238.94 Da        Isoelectric Point: 8.3369

>NTDB_id=716338 PPK11_RS07380 WP_273897630.1 1530560..1531333(-) (proC) [Helicobacter pylori strain 444A6]
MEILQFIGYGNMAQAILEGSHEILSKRFILEVTGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALNNAIDSLHYLKCMPNIASKFALSSTAVCEKTPMPLISQKALSVIESFGNCVRVGNEEQVD
ASVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=716338 PPK11_RS07380 WP_273897630.1 1530560..1531333(-) (proC) [Helicobacter pylori strain 444A6]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGGTTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGACATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCGTTAGCTGGCGTGAGTTTTGAAGCTTTAAATAATGCGATAGATTCTTT
ACATTACTTAAAATGCATGCCCAATATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAAACGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAGTGTTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
GCCAGCGTAGCGACAAACGGGAGTGCACTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGTATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGATGATCATAGAGCAAATTTGCACCCCTAAAGGCGCGACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAAAAGCATGCCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362