Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NRF13_RS07610 Genome accession   NZ_CP102350
Coordinates   1413154..1413618 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain PMC206     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408154..1418618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF13_RS07590 (NRF13_07590) - 1408634..1410454 (+) 1821 WP_058905985.1 PAS domain-containing protein -
  NRF13_RS07595 (NRF13_07595) - 1410430..1411649 (-) 1220 Protein_1419 aminotransferase A -
  NRF13_RS07600 (NRF13_07600) - 1411850..1412011 (-) 162 WP_007409608.1 hypothetical protein -
  NRF13_RS07605 (NRF13_07605) cheV 1412200..1413111 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  NRF13_RS07610 (NRF13_07610) kre 1413154..1413618 (-) 465 WP_003154622.1 YkyB family protein Regulator
  NRF13_RS07615 (NRF13_07615) - 1413741..1415033 (-) 1293 WP_024085236.1 MFS transporter -
  NRF13_RS07620 (NRF13_07620) - 1415109..1415603 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  NRF13_RS07625 (NRF13_07625) - 1415678..1416541 (-) 864 WP_025851492.1 metallophosphoesterase -
  NRF13_RS07630 (NRF13_07630) fadH 1416685..1417449 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  NRF13_RS07635 (NRF13_07635) - 1417559..1418107 (+) 549 Protein_1427 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=716331 NRF13_RS07610 WP_003154622.1 1413154..1413618(-) (kre) [Bacillus velezensis strain PMC206]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=716331 NRF13_RS07610 WP_003154622.1 1413154..1413618(-) (kre) [Bacillus velezensis strain PMC206]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929