Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   PPK11_RS00680 Genome accession   NZ_CP117024
Coordinates   133937..134197 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain 444A6     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 128937..139197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK11_RS00670 - 129500..131434 (-) 1935 WP_273899165.1 type IA DNA topoisomerase -
  PPK11_RS00675 - 131427..133924 (-) 2498 Protein_117 FtsK/SpoIIIE domain-containing protein -
  PPK11_RS00680 comB3 133937..134197 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  PPK11_RS00685 - 134198..134500 (-) 303 WP_180468632.1 TrbC/VirB2 family protein -
  PPK11_RS00690 - 134490..136406 (-) 1917 WP_273898088.1 toprim domain-containing protein -
  PPK11_RS00695 - 136417..137181 (-) 765 WP_273898089.1 hypothetical protein -
  PPK11_RS00700 - 137242..138123 (+) 882 WP_273898091.1 GmrSD restriction endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=716300 PPK11_RS00680 WP_000602756.1 133937..134197(-) (comB3) [Helicobacter pylori strain 444A6]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=716300 PPK11_RS00680 WP_000602756.1 133937..134197(-) (comB3) [Helicobacter pylori strain 444A6]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453