Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6K39_RS33065 Genome accession   NZ_AP024135
Coordinates   7514113..7515468 (+) Length   451 a.a.
NCBI ID   WP_059248243.1    Uniprot ID   A0ABP5P0G7
Organism   Streptomyces sp. EAS-AB2608 strain NBRC 114648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7509113..7520468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K39_RS33045 (EASAB2608_06765) - 7510202..7511023 (-) 822 WP_059248247.1 peptidylprolyl isomerase -
  K6K39_RS33050 (EASAB2608_06766) - 7511194..7511901 (+) 708 WP_059248246.1 MBL fold metallo-hydrolase -
  K6K39_RS33055 (EASAB2608_06767) hisS 7511915..7513177 (+) 1263 WP_059248245.1 histidine--tRNA ligase -
  K6K39_RS33060 (EASAB2608_06768) - 7513387..7514043 (+) 657 WP_086698379.1 vitamin K epoxide reductase family protein -
  K6K39_RS33065 (EASAB2608_06769) rarA 7514113..7515468 (+) 1356 WP_059248243.1 replication-associated recombination protein A Machinery gene
  K6K39_RS33070 (EASAB2608_06770) rpsD 7515770..7516384 (+) 615 WP_059248242.1 30S ribosomal protein S4 -
  K6K39_RS33075 (EASAB2608_06771) - 7516406..7518577 (-) 2172 WP_189397303.1 tetratricopeptide repeat protein -
  K6K39_RS33080 (EASAB2608_06772) - 7518731..7519165 (+) 435 WP_189397304.1 DUF948 domain-containing protein -
  K6K39_RS33085 (EASAB2608_06773) - 7519182..7519529 (+) 348 WP_059248240.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48490.95 Da        Isoelectric Point: 6.5132

>NTDB_id=71630 K6K39_RS33065 WP_059248243.1 7514113..7515468(+) (rarA) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
MEPDLFTAAAEERQEKDPAASPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGNGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDVRGLLRRALSDERGLKDAVTLPEDTEEHLLRIAGGDARRALTALEAAAGAALDQGERE
ISLQTLEQTVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNSATTAIGAAMEDVRKGLAGPVPPHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAQQQYAPDALKDREYYTPSRHGAEARYADAVEWTRKHLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=71630 K6K39_RS33065 WP_059248243.1 7514113..7515468(+) (rarA) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
GTGGAACCCGACCTCTTCACCGCAGCAGCAGAAGAACGCCAGGAGAAGGACCCGGCGGCCAGCCCCCTGGCGGTGCGCAT
GCGCCCGCGCACGCTCGACGAGGTCGTGGGCCAGCAGCACCTGCTGAAGCCCGGCTCCCCGCTGCGCCGGCTGGTCGGCG
AGGGCAACGGCGGCCCCGCCGGACCGTCCTCGGTGATCCTGTGGGGCCCGCCCGGCACCGGCAAGACCACCCTGGCGTAC
GTCGTCTCCAAGGCGACCAACAAGCGGTTCGTGGAGCTGTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCACCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTCCCGGCCGTGGAGAACCGCTGGGTGACCCTGATCGCGGCCACCACGGAGAACCCCTACTTC
TCGGTGATCTCCCCGCTGCTCTCCCGCTCCCTCCTGCTCACCCTCGAACCGCTCACCGACGACGACGTCCGGGGCCTGCT
CCGGCGCGCGCTGAGCGACGAACGCGGCCTGAAGGACGCCGTCACCCTCCCCGAGGACACCGAGGAGCACCTGCTGCGGA
TCGCCGGCGGCGACGCCCGCCGTGCCCTGACCGCCCTGGAGGCCGCCGCCGGCGCCGCCCTGGACCAGGGCGAGCGCGAG
ATCAGCCTGCAGACCCTGGAGCAGACCGTCGACCGGGCCGCGGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
CGCCAGCGCCCTCATCAAGTCCATCCGCGGCTCCGACGTGGACGCGGCCCTGCACTACCTGGCCCGCATGATCGAGGCCG
GCGAGGACCCCCGGTTCATCGCCCGCCGCCTGATGATCTCCGCCAGCGAGGACATCGGCCTGGCCGACCCGAACGCCCTG
CCGATCGCGGTCGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCCGCCCTCACCCTCAGCCACGCCACGAT
CGCCCTGGCCCTCGCCCCCAAGTCCAACTCCGCGACCACCGCGATCGGCGCCGCCATGGAGGACGTACGCAAGGGCCTGG
CCGGACCGGTGCCGCCGCACCTGCGCGACGGGCACTACAAGGGCGCCGCCAAGCTCGGCCACGCCCAGGGGTACGTGTAC
CCGCACGACCTGCCCGAGGGCATCGCCCAGCAGCAGTACGCCCCGGACGCCCTGAAGGACCGCGAGTACTACACGCCGAG
CCGGCACGGCGCCGAGGCCAGATACGCGGACGCCGTGGAGTGGACCCGCAAGCACCTCGGTCGCAAGCGCTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.88

96.009

0.421

Multiple sequence alignment