Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQ490_RS05115 Genome accession   NZ_CP102293
Coordinates   1036805..1038616 (-) Length   603 a.a.
NCBI ID   WP_259951652.1    Uniprot ID   -
Organism   Subdoligranulum variabile strain DSM 15176     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031805..1043616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ490_RS05100 (NQ490_05100) - 1032344..1033036 (-) 693 WP_007047820.1 aspartate/glutamate racemase family protein -
  NQ490_RS05105 (NQ490_05105) - 1033279..1034820 (+) 1542 WP_007047822.1 hypothetical protein -
  NQ490_RS05110 (NQ490_05110) rny 1034926..1036479 (-) 1554 WP_007047823.1 ribonuclease Y -
  NQ490_RS05115 (NQ490_05115) rcrQ 1036805..1038616 (-) 1812 WP_259951652.1 ABC transporter ATP-binding protein Regulator
  NQ490_RS05120 (NQ490_05120) - 1038618..1040837 (-) 2220 WP_007047827.1 ABC transporter ATP-binding protein -
  NQ490_RS05125 (NQ490_05125) - 1040821..1041336 (-) 516 WP_242654995.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ490_RS05130 (NQ490_05130) - 1041767..1042198 (+) 432 WP_007047830.1 Lrp/AsnC family transcriptional regulator -
  NQ490_RS05135 (NQ490_05135) - 1042214..1042612 (+) 399 WP_007047831.1 zinc ribbon domain-containing protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66488.67 Da        Isoelectric Point: 6.5129

>NTDB_id=715976 NQ490_RS05115 WP_259951652.1 1036805..1038616(-) (rcrQ) [Subdoligranulum variabile strain DSM 15176]
MPRPGRMTTERAKDFKGTLRQLLRALNRYKISMAVVVVFAILSTIFNIAGPKVLAKATTALATGWVAKLRGTGGIDFGYI
GRILLILLGMYLLSSAFSFIQSWLMSGLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLIMMLSISARMTLIALLILPVSLVLVMVVVHFSQRFFKAQQATLGVVNGQVEEVYSGHNVIKAFNREQ
AVLDDFNAANDQLYASAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAAGGIITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLAEEEEDQTADPARRADPATIDGQVTFDHVKFGYTPDKTVIRDFSCTVQPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDGGSITLNGHNVRDFDRSALREGFGMVLQDTWLFQGTIMENIRYGRLDATDEEVIAAAKAAGADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNRILVLDEATSSVDTRTEQRIQAAMDHLMQGRTSFIIAHRLSTI
RNADLILVMRDGDIVEQGNHDQLMEAGGFYADLYNSQFEDVTA

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=715976 NQ490_RS05115 WP_259951652.1 1036805..1038616(-) (rcrQ) [Subdoligranulum variabile strain DSM 15176]
ATGCCAAGACCCGGACGGATGACCACCGAACGCGCCAAGGACTTCAAGGGCACGCTGCGTCAGCTGCTGCGCGCTCTGAA
CCGCTATAAAATTTCCATGGCCGTGGTCGTGGTGTTTGCCATCCTCTCTACCATCTTCAATATCGCGGGACCCAAGGTGC
TGGCCAAAGCCACCACCGCCCTGGCCACCGGCTGGGTGGCCAAACTGCGGGGCACCGGCGGCATCGATTTCGGCTATATC
GGCCGCATTCTGCTGATCCTGCTGGGTATGTACCTGCTCTCCTCGGCCTTCAGTTTTATCCAGAGCTGGCTCATGAGCGG
CCTTTCCCAGAAAGTCTGCTACGATTTCCGCCGCCAGATCAGCGAAAAGATCAACCGCCTGCCCCTGGCCTACTTTGAAA
AGCGCACGGTGGGCGAGGTGCTCTCCCGCATCACCAACGATGTGGATACCCTGGGTCAGAGCCTGAACCAGAGCATCACC
CAGCTGATCACCAGCGTCACCACGATGATCGGCGTGCTGATCATGATGCTCTCCATCAGTGCCCGGATGACCCTCATCGC
CCTGCTGATCCTGCCGGTGTCCCTGGTGCTGGTCATGGTTGTGGTCCATTTCAGCCAGCGCTTCTTCAAGGCCCAGCAGG
CCACCCTGGGCGTCGTCAACGGCCAGGTGGAGGAGGTCTACTCCGGCCACAATGTCATCAAGGCGTTCAACCGGGAACAG
GCCGTTCTGGACGACTTCAACGCCGCTAACGACCAGCTCTATGCCTCCGCCTGGAAGAGCCAGTTCCTCTCCGGCCTCAT
GATGCCCATCATGAACTTTGTGGGCAACCTGGGCTATGTGGCGGTGGCCATCGTGGGCAGCATCTTTGCCGCCGGCGGCA
TCATCACCATCGGCGACATCCAGGCCTTCATCCAGTATGTGAAAAACTTTACCCAGCCCATCCAGCAGCTGTCCCAGGTG
TCCAACATGCTCCAGAGCATGGCGGCCGCCGCCGAGCGCGTCTTTGAGTTCCTGGCCGAAGAGGAGGAGGACCAGACCGC
CGATCCGGCCCGCCGCGCCGATCCGGCCACCATCGACGGCCAGGTCACCTTCGACCATGTGAAATTCGGCTATACCCCCG
ACAAGACAGTCATCCGCGACTTCAGCTGTACGGTGCAGCCCGGCCAGAAGGTGGCCATCGTCGGCCCCACCGGCGCCGGC
AAGACCACAATGGTCAAGCTGCTCATGCGGTTCTACGATGTGGACGGCGGTTCCATCACGCTGAACGGCCACAACGTCCG
GGACTTTGACCGCAGTGCCCTGCGGGAAGGCTTCGGCATGGTGCTGCAGGATACCTGGCTGTTCCAGGGCACCATCATGG
AGAACATCCGCTACGGGCGCCTCGACGCCACCGACGAGGAGGTCATCGCTGCGGCCAAGGCGGCGGGCGCCGACCACTTC
ATCCGCACGCTGCCCGGCGGCTACCAGATGGAACTGAACGAGGACGCCTCCAACGTGAGCCAGGGCCAGAAACAGCTGCT
GACCATCGCCCGGGCGATTCTGGCGGACAACCGCATCCTGGTGCTGGACGAAGCCACCAGCAGCGTGGATACCCGCACCG
AGCAGCGCATCCAGGCGGCTATGGACCACCTGATGCAGGGCCGTACCAGCTTCATCATCGCCCATCGGCTGTCCACCATC
CGCAACGCCGATCTGATCCTCGTCATGCGGGACGGCGACATTGTGGAACAGGGCAACCACGACCAGCTGATGGAGGCGGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTTGAGGACGTGACAGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-527)

ABC transporter transmembrane region (ABC_membrane)

(34-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.211

97.512

0.509