Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQ541_RS02865 Genome accession   NZ_CP102292
Coordinates   583065..584891 (+) Length   608 a.a.
NCBI ID   WP_005608888.1    Uniprot ID   V8C5V8
Organism   [Ruminococcus] lactaris ATCC 29176     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 578065..589891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ541_RS02840 (NQ541_02840) - 578261..578632 (+) 372 WP_023922074.1 GntR family transcriptional regulator -
  NQ541_RS02845 (NQ541_02845) - 578635..579486 (+) 852 WP_005608898.1 ATP-binding cassette domain-containing protein -
  NQ541_RS02850 (NQ541_02850) - 579483..580175 (+) 693 WP_005608896.1 ABC-2 transporter permease -
  NQ541_RS02855 (NQ541_02855) - 580381..580824 (+) 444 WP_005608894.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ541_RS02860 (NQ541_02860) - 580826..583072 (+) 2247 WP_005608891.1 ABC transporter ATP-binding protein -
  NQ541_RS02865 (NQ541_02865) rcrQ 583065..584891 (+) 1827 WP_005608888.1 ABC transporter ATP-binding protein Regulator
  NQ541_RS02870 (NQ541_02870) - 585041..585676 (+) 636 WP_005608885.1 TetR/AcrR family transcriptional regulator -
  NQ541_RS02875 (NQ541_02875) - 585794..587584 (+) 1791 WP_005608882.1 ABC transporter ATP-binding protein -
  NQ541_RS02880 (NQ541_02880) - 587593..589320 (+) 1728 WP_044905309.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 67466.05 Da        Isoelectric Point: 6.8883

>NTDB_id=715962 NQ541_RS02865 WP_005608888.1 583065..584891(+) (rcrQ) [[Ruminococcus] lactaris ATCC 29176]
MARRGRMGRGVAPTEKAKDFKGTMKKLIRYMASFKIQIFFVAVFAICGTIFNIAGPKILGKATTEIFNGLVSKVSGGSGM
DFGKIGTILATALSLYLISAACSLIQGFLMTGVSQKTTYKLRKEISQKINRMPMNYFDTKPVGEVLSRVTNDVDTLGQSL
NQSATQLITSVTTIIGVLVMMLSISPLMTLVALLILPLSMLLLSFVMKHSQKYFVGQQEYLGNVNGQVEEIYSGHNIIKA
FNKEEAVIREFNETNGKLYDSAWKSQFFSGMMMPVMQFIGNLGYVGVAVLGGFLTIKNVIEVGDIQSFIQYVRNFTQPIQ
QMAQVANMLQSTAAASERVFEFLEEKEEDQTVEHPVSVENLKGNVEFDHVHFGYNPDKIIINDFSAKVKEGQKIAIVGPT
GAGKTTMIKLLMRFYDVNDGSIKIDGHDIRDFNRSELREMFGMVLQDTWLFHGSIRENIRYGKLDATDEEVIQAAKAAHV
HRFVKTLPGGYDMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGRTSFVIAHRL
STIRDADLILVMKDGDIVEQGNHEELLAKGGFYADLYNSQFENAGECA

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=715962 NQ541_RS02865 WP_005608888.1 583065..584891(+) (rcrQ) [[Ruminococcus] lactaris ATCC 29176]
ATGGCTAGAAGAGGTAGAATGGGGCGAGGTGTTGCACCGACCGAAAAGGCAAAAGATTTCAAAGGAACAATGAAAAAGCT
GATCCGCTATATGGCTTCATTTAAAATACAGATTTTTTTCGTAGCAGTCTTTGCAATTTGCGGAACGATTTTTAATATTG
CCGGACCAAAGATTCTCGGAAAGGCGACAACAGAAATCTTCAATGGTCTTGTCAGTAAGGTTTCAGGCGGATCAGGCATG
GATTTTGGAAAAATCGGAACGATTCTGGCGACAGCATTGAGTCTGTATCTGATCAGTGCAGCGTGCAGCCTGATCCAGGG
ATTCCTGATGACAGGTGTATCGCAGAAGACAACTTATAAATTAAGAAAAGAAATCTCACAGAAGATCAACCGGATGCCGA
TGAATTATTTCGATACGAAACCGGTCGGAGAAGTTCTTTCAAGAGTGACAAATGATGTGGATACTCTCGGACAGAGTCTG
AACCAGAGTGCAACTCAGTTGATCACATCGGTCACAACCATCATCGGTGTGCTGGTGATGATGCTTTCCATCAGTCCGCT
GATGACACTGGTAGCACTGCTGATTCTTCCATTGTCCATGCTGCTGTTGTCATTTGTAATGAAACATTCACAGAAATATT
TCGTAGGACAGCAGGAATATCTTGGAAATGTCAACGGACAGGTAGAGGAAATCTACAGCGGACATAATATCATCAAGGCA
TTTAATAAAGAAGAAGCGGTGATCAGAGAATTTAATGAGACCAACGGAAAGCTTTATGATTCTGCGTGGAAATCTCAGTT
TTTCTCAGGAATGATGATGCCGGTCATGCAGTTTATCGGCAATCTTGGTTATGTAGGTGTGGCAGTCCTTGGAGGATTCC
TGACGATCAAAAATGTGATCGAGGTCGGAGATATTCAGTCATTTATTCAGTATGTCCGTAATTTCACCCAGCCGATCCAG
CAGATGGCACAGGTAGCAAATATGTTGCAGTCTACGGCAGCAGCATCCGAGAGGGTTTTTGAATTTCTTGAAGAAAAAGA
AGAAGATCAGACAGTGGAACATCCTGTGTCCGTAGAAAATCTGAAAGGAAATGTAGAGTTTGACCATGTTCATTTCGGAT
ATAACCCGGATAAGATCATCATCAATGATTTTTCTGCGAAAGTAAAAGAAGGACAGAAGATTGCGATCGTTGGTCCGACC
GGAGCAGGAAAGACGACAATGATCAAGCTGCTAATGAGATTTTATGATGTAAATGATGGTTCGATAAAAATAGATGGACA
CGATATCCGGGATTTCAACCGCAGTGAATTAAGAGAAATGTTCGGAATGGTGCTTCAGGATACATGGCTGTTCCATGGCT
CCATCCGTGAAAATATCCGTTATGGTAAACTGGATGCTACAGATGAAGAAGTGATCCAGGCTGCAAAGGCAGCACATGTG
CATCGATTTGTAAAGACACTTCCAGGTGGATATGATATGGAACTGAACGAAGAAGCAAGCAACGTTTCCCAGGGACAGAA
GCAGCTTCTGACGATTGCACGTGCAATCCTTGCAGATCCAAAGATCCTGATCCTGGATGAGGCGACAAGCTCTGTCGATA
CAAGAACAGAAGTACTGATTCAGAAAGCGATGGATAATCTGATGAAGGGAAGAACGAGCTTTGTGATCGCACACCGTCTG
TCTACGATCCGTGATGCGGATCTGATTCTTGTTATGAAAGACGGAGATATCGTGGAGCAGGGAAATCATGAAGAACTTCT
TGCAAAGGGTGGATTTTATGCAGATCTTTATAATTCCCAGTTTGAAAATGCCGGAGAATGTGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(39-318)

ABC transporter (ABC_tran)

(382-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8C5V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.286

95.888

0.492