Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQ558_RS05140 Genome accession   NZ_CP102282
Coordinates   1123708..1125510 (+) Length   600 a.a.
NCBI ID   WP_005359012.1    Uniprot ID   A5Z8L9
Organism   Eubacterium ventriosum strain ATCC 27560     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118708..1130510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ558_RS05120 (NQ558_05120) - 1119118..1119684 (+) 567 WP_050750929.1 sortase -
  NQ558_RS05125 (NQ558_05125) - 1120054..1120272 (+) 219 WP_040445865.1 HPr family phosphocarrier protein -
  NQ558_RS05130 (NQ558_05130) - 1121033..1121491 (+) 459 WP_005359016.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ558_RS05135 (NQ558_05135) - 1121491..1123704 (+) 2214 WP_005359014.1 ABC transporter ATP-binding protein -
  NQ558_RS05140 (NQ558_05140) rcrQ 1123708..1125510 (+) 1803 WP_005359012.1 ABC transporter ATP-binding protein Regulator
  NQ558_RS05145 (NQ558_05145) - 1125754..1126728 (+) 975 WP_005359010.1 ABC transporter substrate-binding protein -
  NQ558_RS05150 (NQ558_05150) - 1126731..1127507 (+) 777 WP_040445863.1 ABC transporter permease -
  NQ558_RS05155 (NQ558_05155) - 1127504..1128244 (+) 741 WP_005359006.1 ABC transporter ATP-binding protein -
  NQ558_RS05160 (NQ558_05160) - 1128312..1129262 (+) 951 WP_005359003.1 LysR family transcriptional regulator -
  NQ558_RS05165 (NQ558_05165) - 1129529..1129951 (-) 423 WP_005359001.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66916.58 Da        Isoelectric Point: 7.6323

>NTDB_id=715814 NQ558_RS05140 WP_005359012.1 1123708..1125510(+) (rcrQ) [Eubacterium ventriosum strain ATCC 27560]
MPRMNRKPGEKAKDFKGTLKKLIKYAGRYRIGIIAVMICAIASATFSIVSPKILGKATTKLAEGLMSKISGTGSIDFGYI
GRIIIIVLVLYGISSLFNLVQGFTMSTITQKLCYRLRREIVEKINRMPMKYFESRTYGEVLSRITNDVDTLGNGLNQSVT
QLITSSTTMIGVVIMMLTISPLMTLITLLILPVSMIFISFIMKHSQKYFKTQQEYLGHINGQVEENYGGHLVVKAFGKEQ
DVIDEFKKTNNVLYNSAWKSQFLSGMMQPIMTFVGNLGYVGVAISGAFLAINGTITIGDIQAFITYVKNFTQPIAQIAQV
TNMMQSMMAAAERVFEFLEEEEEDQITENPVPIENVKGVVDFEHVHFGYNPDNIIVNDFNAHVKAGQQVAIVGPTGAGKT
TMVKLLMRFYDVNSGEIKLDGHNLKDYNRNELRNAFGMVLQDTWLFKGSIMENIRYGRLDATDEEVIAAAKSAHAHHFIK
TLPGGYDFELNEEASNVSAGQRQLLTIARAILADNPVMILDEATSSVDTRTEHRIQRAMDNLMKGRTSFVIAHRLSTIKN
ADIILVMKDGDIIEQGSHEELMAKKGFYADLYNSQFDVVA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=715814 NQ558_RS05140 WP_005359012.1 1123708..1125510(+) (rcrQ) [Eubacterium ventriosum strain ATCC 27560]
ATGCCAAGAATGAATCGTAAACCGGGAGAGAAAGCAAAAGACTTTAAGGGTACATTAAAGAAGCTTATTAAATATGCCGG
AAGATACAGAATAGGCATTATTGCTGTTATGATATGTGCCATAGCAAGTGCCACATTTTCAATTGTAAGCCCTAAGATTT
TGGGAAAAGCTACAACCAAATTAGCAGAAGGTTTAATGTCCAAGATTTCCGGAACAGGCAGTATTGATTTTGGTTATATT
GGAAGAATAATTATTATAGTATTGGTTCTTTATGGAATAAGCTCATTATTTAACTTAGTTCAGGGCTTTACAATGTCAAC
AATTACACAGAAGTTATGTTACAGACTTCGTCGTGAAATTGTTGAAAAAATCAATCGTATGCCAATGAAATATTTTGAAA
GCAGAACATATGGTGAAGTACTTTCAAGAATTACAAACGATGTTGACACATTGGGTAATGGTTTAAACCAAAGTGTAACA
CAGCTTATTACTTCATCAACAACTATGATTGGTGTAGTAATAATGATGTTAACAATTAGTCCGCTTATGACTTTAATAAC
ATTATTAATACTTCCTGTTAGTATGATTTTTATAAGCTTTATAATGAAGCATTCACAGAAATACTTTAAAACACAGCAGG
AGTATTTAGGTCACATTAACGGTCAGGTTGAAGAGAATTATGGCGGTCATTTAGTAGTTAAAGCTTTTGGAAAAGAGCAG
GATGTAATAGATGAATTTAAGAAGACAAATAATGTTTTGTATAATTCAGCTTGGAAATCACAGTTCTTGTCAGGTATGAT
GCAGCCTATTATGACTTTTGTAGGTAACTTAGGATATGTTGGAGTAGCTATTTCAGGTGCGTTCCTTGCAATTAACGGAA
CGATTACAATCGGTGATATTCAGGCATTTATAACATATGTTAAGAACTTTACACAGCCTATAGCACAGATTGCCCAGGTT
ACTAATATGATGCAGTCAATGATGGCAGCAGCAGAAAGAGTTTTCGAATTTCTTGAGGAAGAAGAGGAAGACCAGATTAC
TGAAAATCCTGTTCCTATTGAAAATGTTAAGGGAGTTGTTGATTTCGAACATGTACATTTCGGATACAATCCTGATAACA
TTATTGTAAATGACTTTAACGCTCACGTTAAGGCAGGTCAGCAGGTAGCAATTGTAGGACCAACAGGTGCAGGAAAGACA
ACAATGGTAAAACTTCTTATGAGATTCTATGATGTTAACTCAGGAGAAATAAAACTTGATGGACATAATTTAAAGGATTA
CAACAGAAATGAACTTCGTAATGCTTTCGGAATGGTTCTTCAGGATACGTGGTTGTTTAAAGGTTCAATAATGGAGAATA
TCAGATACGGTAGACTTGATGCAACAGATGAAGAAGTAATTGCAGCTGCTAAGTCAGCTCACGCACATCATTTCATTAAA
ACATTGCCAGGTGGATATGATTTCGAGTTAAATGAAGAAGCATCTAATGTTTCTGCAGGTCAGAGACAGCTTCTTACAAT
AGCGAGAGCAATCCTTGCAGACAACCCTGTAATGATTCTTGATGAGGCAACATCATCAGTTGACACAAGAACAGAGCATA
GAATCCAGAGAGCCATGGATAACCTTATGAAAGGCAGAACAAGTTTCGTTATAGCTCACAGACTTAGTACAATTAAGAAT
GCGGACATAATTCTTGTAATGAAGGATGGAGATATAATCGAGCAGGGTTCACACGAAGAACTTATGGCAAAGAAAGGCTT
CTACGCAGACTTGTACAATTCACAGTTTGATGTGGTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(377-525)

ABC transporter transmembrane region (ABC_membrane)

(33-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A5Z8L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.463

96.833

0.498