Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQ543_RS06330 Genome accession   NZ_CP102275
Coordinates   1351711..1353564 (-) Length   617 a.a.
NCBI ID   WP_004609698.1    Uniprot ID   B1C1Q8
Organism   Thomasclavelia spiroformis DSM 1552     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346711..1358564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ543_RS06290 (NQ543_06290) - 1346830..1347489 (-) 660 WP_004609706.1 LytR/AlgR family response regulator transcription factor -
  NQ543_RS06295 (NQ543_06295) - 1347668..1348312 (-) 645 WP_004609705.1 putative bacteriocin export ABC transporter -
  NQ543_RS06300 (NQ543_06300) - 1348314..1348922 (-) 609 WP_004609704.1 DUF1430 domain-containing protein -
  NQ543_RS06305 (NQ543_06305) - 1348915..1349214 (-) 300 WP_004609703.1 hypothetical protein -
  NQ543_RS06310 (NQ543_06310) - 1349226..1349609 (-) 384 WP_154645956.1 hypothetical protein -
  NQ543_RS06315 (NQ543_06315) - 1349691..1350341 (-) 651 WP_004609701.1 hypothetical protein -
  NQ543_RS06320 (NQ543_06320) - 1350569..1350835 (-) 267 WP_004609700.1 hypothetical protein -
  NQ543_RS06325 (NQ543_06325) - 1350875..1351426 (-) 552 WP_004609699.1 hypothetical protein -
  NQ543_RS06330 (NQ543_06330) rcrQ 1351711..1353564 (-) 1854 WP_004609698.1 ABC transporter ATP-binding protein Regulator
  NQ543_RS06335 (NQ543_06335) - 1353557..1355785 (-) 2229 WP_004609697.1 ABC transporter ATP-binding protein -
  NQ543_RS06340 (NQ543_06340) - 1355779..1356237 (-) 459 WP_004609696.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ543_RS06345 (NQ543_06345) - 1356540..1357724 (+) 1185 WP_004609695.1 IS110 family transposase -
  NQ543_RS06350 (NQ543_06350) - 1358036..1358455 (-) 420 WP_004609694.1 C-GCAxxG-C-C family protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68642.80 Da        Isoelectric Point: 5.4132

>NTDB_id=715740 NQ543_RS06330 WP_004609698.1 1351711..1353564(-) (rcrQ) [Thomasclavelia spiroformis DSM 1552]
MSNNQRRNGPKFNPGMHGMRGGGEKAKDFKGTIAKLFRYLKPYYFKLVIVIIFAAASTVFSIVGPKILAKATDKLSEGIM
AKVSGTGGIDFEYIGYIIWILVGLYLVSALFSYIQGFITSTISQRVAYDLRTSISKKMDRMPLSYFDRHTSGDILSRVTN
DIDTIAQSLNQSMSQVITSSVTVVGIFIMMLSISPQMTIIAVCVLPVSMLLISIVMKRSQKYFAKQQQALGDVNGHIEEM
YGGHNVVKAFNGEEASVKQFDEYNDSLYESAWKSQFFSGLMQPITNFVGNVGYVAVCLLGGVLAGGGNISIGDIQAFIQY
VRQFNQPISQLAQTMNMLQSTAAAAERVFEFLDEEELEKETPKITKDELEKIKGSVTFADVNFGYLEDQTIINDFSLHVH
SGQTVAIVGPTGAGKTTIVKLLMRFYELNGGTIFIDGKDIRDFARKDLRSLFGMVLQDTWLFNGTIKENLMYSKLDASDQ
EVQEACKVAYVDHFVQTLEDGYDTVINEESSNISQGQKQLLTIARAFLKDPKILILDEATSSVDTRTEVLIQKGMERLME
GRTSFVIAHRLSTIRDADTIIVMKDGDIVELGNHESLLEKDGFYASLYRSQFEGLDN

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=715740 NQ543_RS06330 WP_004609698.1 1351711..1353564(-) (rcrQ) [Thomasclavelia spiroformis DSM 1552]
ATGAGTAATAATCAAAGAAGAAACGGCCCTAAATTCAACCCTGGCATGCATGGTATGCGTGGTGGCGGTGAAAAAGCTAA
GGATTTTAAAGGAACGATTGCTAAGTTATTCAGATATTTAAAACCTTATTATTTTAAATTAGTTATAGTAATTATTTTTG
CAGCTGCTTCAACAGTATTTTCAATTGTTGGACCAAAGATTTTAGCTAAAGCAACTGATAAGTTGAGTGAAGGAATTATG
GCTAAAGTCAGTGGTACTGGTGGTATTGATTTTGAATATATTGGATATATAATTTGGATTTTAGTAGGATTATATTTAGT
GAGTGCTTTATTTAGTTATATTCAAGGATTTATTACTTCTACTATCTCACAACGCGTAGCTTATGATTTAAGAACATCAA
TTTCTAAAAAAATGGATCGTATGCCACTCAGTTATTTTGATCGACATACTAGTGGGGATATATTGAGTAGGGTAACTAAT
GATATTGATACAATTGCTCAATCATTGAATCAAAGTATGTCACAGGTAATTACTTCGAGTGTTACGGTGGTAGGAATTTT
TATCATGATGTTAAGTATTTCGCCACAAATGACAATTATTGCAGTGTGTGTCTTACCTGTTTCAATGTTATTAATTAGCA
TTGTAATGAAACGTTCACAAAAATATTTTGCTAAACAGCAACAAGCATTAGGTGATGTCAATGGCCATATTGAAGAAATG
TATGGTGGACATAACGTTGTTAAAGCATTTAATGGTGAAGAAGCTTCAGTAAAACAGTTTGATGAATATAATGATAGTTT
ATATGAAAGTGCCTGGAAATCGCAATTTTTCTCTGGCTTAATGCAGCCAATTACTAATTTTGTTGGTAATGTTGGTTATG
TTGCCGTTTGTTTGTTAGGTGGTGTCTTAGCCGGTGGTGGAAATATTTCGATTGGTGATATTCAAGCATTTATCCAATAT
GTAAGACAATTTAATCAACCAATTAGTCAATTAGCTCAAACAATGAATATGTTACAAAGTACAGCAGCAGCTGCAGAACG
TGTTTTTGAGTTTTTAGATGAAGAAGAGTTAGAAAAAGAAACTCCTAAGATTACAAAAGACGAACTTGAAAAGATCAAAG
GTTCTGTAACCTTTGCTGATGTTAATTTTGGTTATTTAGAAGATCAAACAATTATTAATGATTTTAGTTTGCATGTTCAT
TCTGGACAAACTGTTGCAATTGTAGGACCTACAGGAGCAGGCAAGACAACAATTGTTAAATTATTAATGAGATTTTATGA
GTTAAATGGAGGAACTATCTTTATTGATGGTAAAGATATTCGAGATTTTGCTCGTAAAGATTTACGTTCATTATTTGGAA
TGGTTTTACAAGATACTTGGTTATTTAATGGTACGATTAAAGAAAATTTAATGTATAGTAAATTAGATGCCAGTGATCAA
GAAGTTCAAGAAGCTTGTAAAGTGGCTTATGTTGATCACTTTGTTCAAACTTTAGAAGATGGTTATGATACAGTTATTAA
TGAAGAATCATCAAATATTTCACAAGGACAAAAACAGTTATTAACGATTGCAAGAGCATTTTTAAAGGATCCAAAAATTT
TGATCCTTGATGAAGCTACTTCATCAGTAGACACAAGAACAGAAGTTTTGATTCAAAAAGGAATGGAAAGATTGATGGAA
GGAAGAACAAGTTTTGTTATTGCTCATCGTTTATCAACAATTCGAGATGCTGATACAATTATTGTTATGAAAGATGGCGA
TATTGTTGAACTTGGTAATCATGAGTCATTACTTGAAAAAGATGGTTTCTATGCATCGTTATATCGTTCACAGTTTGAAG
GACTTGATAACTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-327)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1C1Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.286

94.489

0.485