Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQ514_RS05020 Genome accession   NZ_CP102273
Coordinates   1038965..1040824 (+) Length   619 a.a.
NCBI ID   WP_007286000.1    Uniprot ID   R5XCD9
Organism   Intestinibacter bartlettii strain DSM 16795     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033965..1045824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ514_RS05005 (NQ514_05015) - 1035041..1035769 (-) 729 WP_022071397.1 hypothetical protein -
  NQ514_RS05010 (NQ514_05020) - 1036125..1036583 (+) 459 WP_007286003.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ514_RS05015 (NQ514_05025) - 1036678..1038972 (+) 2295 WP_078688004.1 ABC transporter ATP-binding protein -
  NQ514_RS05020 (NQ514_05030) rcrQ 1038965..1040824 (+) 1860 WP_007286000.1 ABC transporter ATP-binding protein Regulator
  NQ514_RS05025 (NQ514_05035) - 1040903..1041340 (+) 438 WP_007285999.1 YaiI/YqxD family protein -
  NQ514_RS05030 (NQ514_05040) - 1041467..1042102 (+) 636 WP_039905521.1 HAD family hydrolase -
  NQ514_RS05035 (NQ514_05045) - 1042245..1043360 (-) 1116 WP_007285997.1 DEAD/DEAH box helicase -
  NQ514_RS05040 (NQ514_05050) - 1043830..1044444 (+) 615 WP_007285996.1 YitT family protein -
  NQ514_RS05045 (NQ514_05055) - 1044797..1045108 (+) 312 WP_022071393.1 hypothetical protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68674.08 Da        Isoelectric Point: 6.0896

>NTDB_id=715708 NQ514_RS05020 WP_007286000.1 1038965..1040824(+) (rcrQ) [Intestinibacter bartlettii strain DSM 16795]
MSNDNRRGPGRGPMGHGRGMMPGEKAKDFKGTMKKLMSYLGKYTYAIIAVFIFAIGSVAFSVIGPKVLGKATTEIFNGLI
GKISGGDGIDFDKIKIILLTLVALYIVSAILSFIQGFIMSGISQKLAYNLRDELSKKINRLPMSYFDKTTNGEVLSRFTN
DIDTLAQSLNQSLTQIITAVTTLVGVFIMMLTISGIMTVAALVIIPIGMFAISMIIKRSQKFFAQQQEFLGNVNGQVEEL
YGGHLVVQAFNGQGDAIEKFDKTNEKLYQSAWKSQFLSGLMQPLMSFIGNLGYVLISILGGFLVIKNYIEVGDIQSFIQY
VRQFNQPLNQIAQISNQLQATAASAERIFAFLAEEEEPVTENDSVKVTRHDGEVIFDHVRFGYDENKVIIKDFNAKVKPG
QKIAIVGPTGAGKTTIIKLLMRFYDVNSGAIYVDGKNIKDYNRQELRSHFGMVLQDTWLFSGSIKDNIKYGKLDATDEQV
KQAAKAAHVDHFIKTLPSGYDMVLNEEASNVSQGQKQLLTIARAILADPEILILDEATSSVDTRTEVLIQKAMDNLMENR
TSFIIAHRLSTIRNADLILVLNEGDIIEQGTHEELLAQNGFYTNLYNSQFENEEEDQAV

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=715708 NQ514_RS05020 WP_007286000.1 1038965..1040824(+) (rcrQ) [Intestinibacter bartlettii strain DSM 16795]
ATGAGTAATGATAATAGAAGAGGACCTGGACGTGGACCTATGGGACATGGCCGTGGAATGATGCCTGGCGAAAAAGCAAA
AGACTTTAAAGGTACTATGAAAAAATTAATGTCTTATTTGGGTAAATATACTTATGCTATTATAGCAGTATTTATATTTG
CTATAGGTAGTGTTGCATTCTCAGTAATAGGACCTAAGGTATTGGGAAAAGCGACAACAGAAATATTTAATGGATTAATT
GGGAAAATCTCAGGTGGAGACGGAATAGATTTTGATAAAATAAAAATAATATTATTAACTTTAGTAGCTTTATATATAGT
AAGTGCAATATTATCTTTTATACAAGGTTTTATAATGAGTGGTATATCTCAAAAACTAGCTTATAACTTAAGAGATGAAC
TTTCTAAAAAGATAAATAGATTGCCAATGAGTTATTTTGATAAAACTACTAATGGTGAAGTATTATCTAGATTTACAAAT
GATATAGATACATTAGCACAAAGTTTAAATCAAAGTTTAACTCAAATAATAACAGCAGTAACAACTTTAGTGGGTGTATT
TATAATGATGCTTACTATAAGTGGTATAATGACAGTTGCAGCACTTGTAATAATACCAATAGGAATGTTTGCGATATCAA
TGATAATAAAAAGATCACAAAAGTTCTTCGCACAACAACAAGAATTCTTAGGAAATGTAAATGGTCAAGTCGAGGAATTA
TATGGTGGTCACTTAGTTGTTCAAGCTTTCAATGGTCAAGGTGATGCTATTGAAAAGTTTGATAAAACTAATGAAAAATT
ATATCAATCAGCTTGGAAATCACAATTCTTATCAGGTTTAATGCAACCTTTAATGAGTTTTATTGGTAACTTAGGATATG
TATTAATATCAATATTAGGAGGATTTTTAGTAATTAAAAATTATATCGAAGTTGGGGATATACAATCATTTATCCAATAT
GTAAGACAGTTTAATCAACCATTAAATCAAATTGCACAAATATCAAATCAATTACAAGCGACTGCTGCATCAGCTGAGAG
AATATTTGCATTCTTAGCTGAAGAGGAAGAACCAGTAACAGAAAACGACTCAGTTAAAGTTACTAGACATGATGGAGAAG
TTATATTTGACCATGTTAGATTTGGATATGATGAAAATAAAGTAATAATAAAAGACTTTAATGCTAAGGTTAAACCAGGT
CAAAAAATAGCTATAGTAGGTCCAACAGGAGCTGGTAAGACTACTATAATTAAATTACTTATGAGGTTCTATGATGTGAA
TAGTGGTGCAATATACGTAGATGGTAAAAATATAAAAGATTACAATAGACAAGAGCTTAGAAGCCATTTTGGTATGGTTT
TACAAGATACATGGCTATTTAGTGGTTCTATAAAAGACAATATAAAATACGGAAAACTAGATGCTACAGATGAGCAAGTA
AAACAAGCAGCTAAAGCAGCACATGTAGACCATTTTATAAAAACTTTACCATCTGGATATGATATGGTATTAAACGAAGA
GGCAAGCAACGTTTCACAAGGTCAGAAACAATTACTTACAATAGCTCGTGCAATACTTGCAGACCCAGAAATATTAATAT
TAGACGAAGCGACAAGTTCTGTAGATACAAGAACAGAAGTTTTAATCCAAAAAGCTATGGATAATTTAATGGAAAACAGA
ACAAGTTTCATAATTGCACATAGATTATCAACAATAAGAAATGCTGACTTAATACTAGTATTAAATGAGGGAGATATAAT
AGAACAAGGAACTCATGAAGAGTTATTAGCTCAAAATGGATTCTATACTAATTTATACAACTCTCAATTTGAAAACGAAG
AAGAAGATCAAGCAGTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-539)

ABC transporter transmembrane region (ABC_membrane)

(47-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R5XCD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.795

94.507

0.49