Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQ534_RS16200 Genome accession   NZ_CP102268
Coordinates   3493638..3495458 (+) Length   606 a.a.
NCBI ID   WP_260042785.1    Uniprot ID   -
Organism   Marvinbryantia formatexigens DSM 14469     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3487349..3500779 3493638..3495458 within 0


Gene organization within MGE regions


Location: 3487349..3500779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ534_RS16170 (NQ534_16170) - 3487349..3488242 (+) 894 WP_006863000.1 Fic family protein -
  NQ534_RS16175 (NQ534_16175) - 3488264..3489658 (+) 1395 WP_006862999.1 hypothetical protein -
  NQ534_RS16180 (NQ534_16180) - 3490184..3490438 (+) 255 WP_040784137.1 hypothetical protein -
  NQ534_RS16185 (NQ534_16185) - 3490496..3491209 (+) 714 WP_040784135.1 ABC transporter permease -
  NQ534_RS16190 (NQ534_16190) - 3491350..3491769 (+) 420 WP_006862996.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ534_RS16195 (NQ534_16195) rcrP 3491888..3493645 (+) 1758 WP_260042784.1 ABC transporter ATP-binding protein Regulator
  NQ534_RS16200 (NQ534_16200) rcrQ 3493638..3495458 (+) 1821 WP_260042785.1 ABC transporter ATP-binding protein Regulator
  NQ534_RS16205 (NQ534_16205) - 3495497..3496393 (+) 897 WP_006864561.1 aldo/keto reductase -
  NQ534_RS21445 - 3496472..3497299 (+) 828 WP_006864560.1 ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein -
  NQ534_RS16220 (NQ534_16220) - 3497236..3497520 (-) 285 WP_040785588.1 hypothetical protein -
  NQ534_RS16225 (NQ534_16225) - 3497645..3497872 (+) 228 WP_006864559.1 excisionase -
  NQ534_RS16230 (NQ534_16230) - 3497973..3498218 (+) 246 WP_006864558.1 excisionase -
  NQ534_RS16235 (NQ534_16235) - 3498215..3498424 (+) 210 WP_006864557.1 helix-turn-helix domain-containing protein -
  NQ534_RS16240 (NQ534_16240) - 3498425..3499699 (+) 1275 WP_006864556.1 site-specific integrase -
  NQ534_RS16245 (NQ534_16245) - 3499847..3500215 (+) 369 WP_050778394.1 DUF4145 domain-containing protein -
  NQ534_RS16250 (NQ534_16250) - 3500240..3500779 (+) 540 WP_006864554.1 hypothetical protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 66474.66 Da        Isoelectric Point: 7.1279

>NTDB_id=715654 NQ534_RS16200 WP_260042785.1 3493638..3495458(+) (rcrQ) [Marvinbryantia formatexigens DSM 14469]
MAEKIARNHQNSPGIPGGMGTGEKSKNLKKAYADFIHYLGRYKWSILAAAIFSVAGAILNLIGPNKLSEVTDLITEGLSG
SIQLSAVVQIASLLAVLYAFGFLLNYAQGFIMATVSQRITQNMRRDISTKINKLPLRYFDSHSTGDVLSRVTNDVDTVGQ
TMNQSFSTLVSSLSLLIGSVLMMFLTNWIMAVTGIIAALIGFSGILFIISKSQKYFTEQQQELGSLNGQVEETYSGFTVV
KAYNGGRKAKEEFHQRSSRLYACAWKSQFLSGLMMPFMIFIGNFAYVVVCIVGAVLAVQGSISFGTIVAFMLYIRLFTQP
LQNISQALSSVQSMAASCERVFEFLAEKEMEDESYKKVELCSVKGDVIFDHVKFGYDPGKTIINDFSSRVKAGQKIAIVG
PTGAGKTTMVNLLMRFYELNGGTITIDGTPINELKRENIHNLFGMVLQDTWMFKGTLRENLVYSKTGVTDKKLDEVCAAT
GLTGLVKRLPDGYDTVLGDNASLSAGQKQLITIARAMIEDAPLLILDEATSSVDTRTEQKVQKAMDSLTEGRTSFVIAHR
LSTIKNADCILVMKDGDIIESGSHEELLEKSGFYADLYNSQFEQAS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=715654 NQ534_RS16200 WP_260042785.1 3493638..3495458(+) (rcrQ) [Marvinbryantia formatexigens DSM 14469]
ATGGCTGAGAAAATCGCAAGGAATCACCAAAACAGTCCTGGTATTCCCGGAGGCATGGGAACCGGTGAAAAAAGTAAGAA
CTTGAAAAAGGCGTATGCTGATTTTATTCATTATCTTGGAAGGTATAAATGGAGCATTCTGGCAGCGGCTATTTTCTCTG
TCGCAGGCGCTATCTTGAACCTGATTGGCCCGAATAAACTCAGTGAAGTAACGGATCTGATTACGGAGGGTCTATCCGGT
TCCATTCAGCTTTCTGCTGTGGTACAGATTGCCTCCCTATTGGCTGTCCTGTATGCGTTTGGGTTTCTGCTCAATTATGC
GCAGGGCTTCATTATGGCGACTGTTTCCCAACGAATCACGCAGAATATGCGCCGTGATATTTCGACAAAAATCAATAAGC
TGCCTCTAAGATATTTTGATTCTCATTCAACAGGCGATGTATTGAGCCGTGTTACCAATGATGTGGATACTGTGGGCCAG
ACCATGAACCAAAGTTTTTCCACATTGGTTTCTTCGCTCTCTCTATTGATTGGTTCTGTCCTGATGATGTTCCTGACAAA
CTGGATTATGGCAGTTACCGGAATTATTGCAGCGCTGATTGGGTTTTCTGGTATTCTGTTCATTATTTCAAAATCTCAGA
AATATTTTACCGAGCAGCAACAGGAACTTGGAAGTTTAAATGGTCAGGTAGAGGAAACTTACAGCGGTTTTACCGTTGTT
AAAGCATACAACGGAGGAAGAAAAGCAAAAGAAGAGTTCCATCAGCGCAGCAGCCGTTTGTATGCCTGTGCATGGAAGAG
TCAATTTCTCTCTGGTCTGATGATGCCATTTATGATCTTCATCGGTAATTTTGCGTATGTGGTGGTATGTATTGTGGGTG
CCGTCCTTGCTGTGCAGGGTTCTATTTCTTTCGGTACAATCGTGGCATTTATGCTGTATATCCGGTTGTTTACGCAGCCG
TTGCAGAATATTTCTCAGGCATTGTCCAGCGTACAGAGTATGGCTGCTTCCTGTGAGCGTGTATTTGAGTTTCTGGCTGA
AAAAGAAATGGAGGATGAAAGCTACAAAAAAGTAGAACTGTGCAGTGTAAAGGGAGATGTTATCTTTGACCATGTTAAAT
TCGGGTATGATCCGGGCAAAACCATCATCAACGACTTTTCCAGCCGTGTGAAAGCAGGACAGAAAATTGCCATTGTCGGG
CCTACCGGAGCTGGAAAGACAACGATGGTAAACCTGCTGATGCGGTTCTATGAGTTGAATGGCGGTACAATCACCATAGA
TGGGACGCCGATCAACGAACTGAAAAGAGAGAACATCCATAATTTGTTTGGTATGGTGCTTCAAGACACATGGATGTTTA
AAGGAACACTTCGTGAAAACCTTGTTTACAGCAAAACCGGTGTAACGGATAAAAAACTGGACGAGGTCTGTGCGGCTACG
GGACTGACGGGCCTTGTAAAGCGTCTGCCGGATGGTTATGATACAGTACTTGGTGATAATGCCAGTCTTTCTGCCGGACA
GAAGCAGTTGATCACGATTGCCCGCGCCATGATAGAGGATGCTCCCCTGCTGATTCTGGACGAAGCAACCAGTTCCGTGG
ATACCCGTACTGAGCAGAAAGTGCAAAAAGCGATGGACTCGCTGACGGAGGGACGTACCAGCTTTGTGATCGCTCACAGG
CTGTCTACGATAAAAAATGCTGACTGTATCCTTGTTATGAAGGATGGAGATATTATCGAGAGTGGCAGTCATGAGGAGCT
TCTTGAAAAAAGCGGATTTTACGCAGATTTGTATAACAGCCAGTTTGAGCAGGCGTCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-321)

ABC transporter (ABC_tran)

(384-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.085

93.564

0.525