Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | NQZ88_RS00880 | Genome accession | NZ_CP102152 |
| Coordinates | 135704..136657 (+) | Length | 317 a.a. |
| NCBI ID | WP_257116215.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain DNS11 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 107215..171199 | 135704..136657 | within | 0 |
Gene organization within MGE regions
Location: 107215..171199
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQZ88_RS00735 (NQZ88_00735) | - | 107425..107634 (+) | 210 | WP_023369068.1 | heavy-metal-associated domain-containing protein | - |
| NQZ88_RS00740 (NQZ88_00740) | - | 107879..108253 (-) | 375 | WP_023369069.1 | HIT family protein | - |
| NQZ88_RS00745 (NQZ88_00745) | - | 108307..109089 (-) | 783 | WP_023369071.1 | TMEM175 family protein | - |
| NQZ88_RS00750 (NQZ88_00750) | tyrS | 109093..110349 (-) | 1257 | WP_023369073.1 | tyrosine--tRNA ligase | - |
| NQZ88_RS00755 (NQZ88_00755) | pbp1b | 110503..112926 (+) | 2424 | WP_023369075.1 | penicillin-binding protein PBP1B | - |
| NQZ88_RS00760 (NQZ88_00760) | rpoB | 113275..116847 (+) | 3573 | WP_002936570.1 | DNA-directed RNA polymerase subunit beta | - |
| NQZ88_RS00765 (NQZ88_00765) | rpoC | 117025..120672 (+) | 3648 | WP_012774906.1 | DNA-directed RNA polymerase subunit beta' | - |
| NQZ88_RS00770 (NQZ88_00770) | - | 120823..121188 (+) | 366 | WP_023369079.1 | DUF1033 family protein | - |
| NQZ88_RS00775 (NQZ88_00775) | - | 121223..122173 (-) | 951 | Protein_119 | S66 peptidase family protein | - |
| NQZ88_RS00780 (NQZ88_00780) | comYA | 122259..123209 (+) | 951 | WP_044760311.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| NQZ88_RS00785 (NQZ88_00785) | comYB | 123121..124158 (+) | 1038 | WP_257116212.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| NQZ88_RS00790 (NQZ88_00790) | comYC | 124160..124441 (+) | 282 | WP_074389246.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| NQZ88_RS00795 (NQZ88_00795) | comGD | 124422..124829 (+) | 408 | WP_074389247.1 | competence type IV pilus minor pilin ComGD | - |
| NQZ88_RS00800 (NQZ88_00800) | comYE | 124801..125094 (+) | 294 | WP_024413203.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| NQZ88_RS00805 (NQZ88_00805) | comGF/cglF | 125081..125515 (+) | 435 | WP_074389248.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| NQZ88_RS00810 (NQZ88_00810) | comGG | 125493..125903 (+) | 411 | WP_074389249.1 | competence type IV pilus minor pilin ComGG | - |
| NQZ88_RS00815 (NQZ88_00815) | - | 126384..126809 (-) | 426 | WP_226319165.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| NQZ88_RS00820 (NQZ88_00820) | - | 127133..127708 (-) | 576 | WP_074392204.1 | hypothetical protein | - |
| NQZ88_RS00825 (NQZ88_00825) | - | 127729..127902 (-) | 174 | WP_257116213.1 | hypothetical protein | - |
| NQZ88_RS00830 (NQZ88_00830) | - | 128207..129643 (-) | 1437 | WP_257116214.1 | phage/plasmid primase, P4 family | - |
| NQZ88_RS00835 (NQZ88_00835) | - | 129706..130584 (-) | 879 | WP_074389575.1 | primase alpha helix C-terminal domain-containing protein | - |
| NQZ88_RS00840 (NQZ88_00840) | - | 130719..131003 (-) | 285 | WP_044766582.1 | hypothetical protein | - |
| NQZ88_RS00845 (NQZ88_00845) | - | 130993..131331 (-) | 339 | WP_074390405.1 | hypothetical protein | - |
| NQZ88_RS00850 (NQZ88_00850) | - | 131343..131537 (-) | 195 | WP_225620783.1 | hypothetical protein | - |
| NQZ88_RS00855 (NQZ88_00855) | - | 131548..131991 (-) | 444 | WP_074390406.1 | hypothetical protein | - |
| NQZ88_RS00860 (NQZ88_00860) | - | 132463..133089 (-) | 627 | WP_074390407.1 | Rha family transcriptional regulator | - |
| NQZ88_RS00865 (NQZ88_00865) | - | 133106..133306 (-) | 201 | WP_015647585.1 | helix-turn-helix transcriptional regulator | - |
| NQZ88_RS00870 (NQZ88_00870) | - | 133492..134001 (+) | 510 | WP_370695883.1 | helix-turn-helix domain-containing protein | - |
| NQZ88_RS00875 (NQZ88_00875) | - | 134462..135607 (+) | 1146 | WP_074390408.1 | site-specific integrase | - |
| NQZ88_RS00880 (NQZ88_00880) | comYH | 135704..136657 (+) | 954 | WP_257116215.1 | class I SAM-dependent methyltransferase | Machinery gene |
| NQZ88_RS00885 (NQZ88_00885) | - | 136707..137894 (+) | 1188 | WP_074389251.1 | acetate kinase | - |
| NQZ88_RS00890 (NQZ88_00890) | - | 138209..138760 (+) | 552 | WP_024389479.1 | folate family ECF transporter S component | - |
| NQZ88_RS00895 (NQZ88_00895) | - | 138816..140072 (+) | 1257 | WP_074389253.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| NQZ88_RS00900 (NQZ88_00900) | pepA | 140117..141178 (-) | 1062 | WP_074389254.1 | glutamyl aminopeptidase | - |
| NQZ88_RS00905 (NQZ88_00905) | - | 141325..141609 (+) | 285 | WP_044674517.1 | DUF4651 domain-containing protein | - |
| NQZ88_RS00910 (NQZ88_00910) | - | 141606..141926 (+) | 321 | WP_024386832.1 | thioredoxin family protein | - |
| NQZ88_RS00915 (NQZ88_00915) | - | 141971..142927 (+) | 957 | WP_044754802.1 | DUF1002 domain-containing protein | - |
| NQZ88_RS00920 (NQZ88_00920) | ytpR | 142946..143569 (+) | 624 | WP_074389255.1 | YtpR family tRNA-binding protein | - |
| NQZ88_RS00925 (NQZ88_00925) | - | 143602..144381 (-) | 780 | WP_074389256.1 | DUF2785 domain-containing protein | - |
| NQZ88_RS00930 (NQZ88_00930) | ssbA | 144436..144831 (+) | 396 | WP_011921737.1 | single-stranded DNA-binding protein | Machinery gene |
| NQZ88_RS00935 (NQZ88_00935) | - | 144950..145195 (-) | 246 | WP_074389257.1 | hypothetical protein | - |
| NQZ88_RS00940 (NQZ88_00940) | groES | 145392..145673 (+) | 282 | WP_074389258.1 | co-chaperone GroES | - |
| NQZ88_RS00945 (NQZ88_00945) | groL | 145685..147307 (+) | 1623 | WP_074389259.1 | chaperonin GroEL | - |
| NQZ88_RS00950 (NQZ88_00950) | rpsL | 147539..147952 (+) | 414 | WP_002940030.1 | 30S ribosomal protein S12 | - |
| NQZ88_RS00955 (NQZ88_00955) | rpsG | 147969..148439 (+) | 471 | WP_002940031.1 | 30S ribosomal protein S7 | - |
| NQZ88_RS00960 (NQZ88_00960) | fusA | 148767..150848 (+) | 2082 | WP_002938501.1 | elongation factor G | - |
| NQZ88_RS00965 (NQZ88_00965) | - | 151837..153021 (+) | 1185 | Protein_157 | M13 family peptidase | - |
| NQZ88_RS00970 (NQZ88_00970) | - | 153229..153828 (+) | 600 | WP_228476909.1 | M13-type metalloendopeptidase | - |
| NQZ88_RS00975 (NQZ88_00975) | gap | 154195..155205 (+) | 1011 | WP_012775479.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| NQZ88_RS00980 (NQZ88_00980) | pgk | 155461..156660 (+) | 1200 | WP_014637337.1 | phosphoglycerate kinase | - |
| NQZ88_RS00985 (NQZ88_00985) | - | 157440..157955 (+) | 516 | WP_024403309.1 | aromatic acid exporter family protein | - |
| NQZ88_RS00990 (NQZ88_00990) | - | 158031..158402 (+) | 372 | WP_002940041.1 | MerR family transcriptional regulator | - |
| NQZ88_RS00995 (NQZ88_00995) | glnA | 158431..159777 (+) | 1347 | WP_074389261.1 | type I glutamate--ammonia ligase | - |
| NQZ88_RS01000 (NQZ88_01000) | rnjA | 160104..161783 (-) | 1680 | WP_002938522.1 | ribonuclease J1 | - |
| NQZ88_RS01005 (NQZ88_01005) | - | 161787..162017 (-) | 231 | WP_002938523.1 | DNA-dependent RNA polymerase subunit epsilon | - |
| NQZ88_RS01010 (NQZ88_01010) | tsaB | 162469..163152 (+) | 684 | WP_074389262.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| NQZ88_RS01015 (NQZ88_01015) | rimI | 163149..163589 (+) | 441 | WP_074389263.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| NQZ88_RS01020 (NQZ88_01020) | tsaD | 163579..164586 (+) | 1008 | WP_074389264.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| NQZ88_RS01025 (NQZ88_01025) | - | 164763..165599 (-) | 837 | WP_024382108.1 | AraC family transcriptional regulator | - |
| NQZ88_RS01030 (NQZ88_01030) | - | 165814..167088 (+) | 1275 | WP_074389265.1 | sugar ABC transporter substrate-binding protein | - |
| NQZ88_RS01035 (NQZ88_01035) | - | 167157..168050 (+) | 894 | WP_074389266.1 | carbohydrate ABC transporter permease | - |
| NQZ88_RS01040 (NQZ88_01040) | - | 168061..168891 (+) | 831 | WP_074389267.1 | carbohydrate ABC transporter permease | - |
| NQZ88_RS01045 (NQZ88_01045) | - | 168901..171102 (+) | 2202 | WP_074389268.1 | alpha-galactosidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35794.98 Da Isoelectric Point: 4.4133
>NTDB_id=715044 NQZ88_RS00880 WP_257116215.1 135704..136657(+) (comYH) [Streptococcus suis strain DNS11]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHEMDLVVNNNKTLKQLDLTKEEWRRAFQFLFIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVMVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHEMDLVVNNNKTLKQLDLTKEEWRRAFQFLFIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVMVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=715044 NQZ88_RS00880 WP_257116215.1 135704..136657(+) (comYH) [Streptococcus suis strain DNS11]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGATGGACCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTTCCAATTCCTGTTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGATGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGCTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGGCGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGATGGACCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTTCCAATTCCTGTTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGATGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGCTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGGCGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
61.392 |
99.685 |
0.612 |
| comYH | Streptococcus mutans UA159 |
61.076 |
99.685 |
0.609 |