Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FFK26_RS01985 Genome accession   NZ_AP024130
Coordinates   428348..428815 (-) Length   155 a.a.
NCBI ID   WP_040090373.1    Uniprot ID   -
Organism   Escherichia coli strain SI-NP020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423348..433815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFK26_RS01960 (BvCmsSINP020_0385) rpsG 423489..423959 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  FFK26_RS01965 (BvCmsSINP020_0386) fusA 424056..426170 (+) 2115 WP_000124700.1 elongation factor G -
  FFK26_RS01970 (BvCmsSINP020_0387) tuf 426241..427425 (+) 1185 WP_000031783.1 elongation factor Tu -
  FFK26_RS01975 (BvCmsSINP020_0388) bfd 427608..427802 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  FFK26_RS01980 (BvCmsSINP020_0389) bfr 427875..428351 (+) 477 WP_000675515.1 bacterioferritin -
  FFK26_RS01985 (BvCmsSINP020_0390) pilD 428348..428815 (-) 468 WP_040090373.1 A24 family peptidase Machinery gene
  FFK26_RS01990 (BvCmsSINP020_0391) rpsJ 429194..429505 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  FFK26_RS01995 (BvCmsSINP020_0392) rplC 429538..430167 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  FFK26_RS02000 (BvCmsSINP020_0393) rplD 430178..430783 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  FFK26_RS02005 (BvCmsSINP020_0394) rplW 430780..431082 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  FFK26_RS02010 (BvCmsSINP020_0395) rplB 431100..431921 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  FFK26_RS02015 (BvCmsSINP020_0396) rpsS 431938..432216 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  FFK26_RS02020 (BvCmsSINP020_0397) rplV 432231..432563 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  FFK26_RS02025 (BvCmsSINP020_0398) rpsC 432581..433282 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  FFK26_RS02030 (BvCmsSINP020_0399) rplP 433295..433705 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16922.08 Da        Isoelectric Point: 8.1338

>NTDB_id=71494 FFK26_RS01985 WP_040090373.1 428348..428815(-) (pilD) [Escherichia coli strain SI-NP020]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGFRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=71494 FFK26_RS01985 WP_040090373.1 428348..428815(-) (pilD) [Escherichia coli strain SI-NP020]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTTTCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

45.6

80.645

0.368

Multiple sequence alignment