Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NQZ91_RS02300 Genome accession   NZ_CP102145
Coordinates   472647..473480 (-) Length   277 a.a.
NCBI ID   WP_105111684.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 467647..478480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS02285 (NQZ91_02285) uidA 468007..469806 (-) 1800 WP_105111687.1 beta-glucuronidase -
  NQZ91_RS02290 (NQZ91_02290) - 469822..470850 (-) 1029 WP_105111686.1 sugar kinase -
  NQZ91_RS02295 (NQZ91_02295) - 470906..472459 (-) 1554 WP_172009136.1 MFS transporter -
  NQZ91_RS02300 (NQZ91_02300) endA 472647..473480 (-) 834 WP_105111684.1 DNA/RNA non-specific endonuclease Machinery gene
  NQZ91_RS02305 (NQZ91_02305) - 473509..473700 (-) 192 WP_257117765.1 DNA-directed RNA polymerase subunit beta -
  NQZ91_RS02310 (NQZ91_02310) murA 473693..474976 (-) 1284 WP_257117766.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NQZ91_RS02315 (NQZ91_02315) - 474991..475221 (-) 231 WP_105111681.1 DUF1146 family protein -
  NQZ91_RS02320 (NQZ91_02320) - 475284..475700 (-) 417 WP_105111680.1 F0F1 ATP synthase subunit epsilon -
  NQZ91_RS02325 (NQZ91_02325) atpD 475710..477116 (-) 1407 WP_105111679.1 F0F1 ATP synthase subunit beta -
  NQZ91_RS02330 (NQZ91_02330) - 477216..478091 (-) 876 WP_257117767.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 30374.45 Da        Isoelectric Point: 6.2360

>NTDB_id=714929 NQZ91_RS02300 WP_105111684.1 472647..473480(-) (endA) [Streptococcus suis strain DNS20]
MNNKTKKQATSLLSLLVTILVVGGGYFFNQPSSTSQDLSYYVNQSSASQSTPDKELASSVLTDEAKKQLGGSIQWNGAGA
FIINNNKTNLDASVSSMPYADNKTKRVQGEEIPTVANALMAKSTRQYKDRDQTGQGRTSWTPAGWHQVHDLPGEYDHAVD
RGHLLGYALIGGLDGFDASTSNPKNIATQTAWSNQAYEDYSTGQNYYETKVRRALDKNKRVRYRVTLIYADDDDLIALGS
HLEAKSSDGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 834 bp        

>NTDB_id=714929 NQZ91_RS02300 WP_105111684.1 472647..473480(-) (endA) [Streptococcus suis strain DNS20]
ATGAATAATAAAACGAAAAAACAGGCGACTAGTTTGCTGAGCCTGCTGGTGACTATTTTGGTGGTCGGCGGAGGTTACTT
TTTTAATCAGCCGTCATCTACAAGTCAGGATTTGTCCTACTATGTCAATCAGTCCAGTGCAAGTCAATCAACACCCGACA
AGGAGTTGGCGTCCAGTGTATTGACGGATGAGGCCAAGAAACAACTGGGTGGCTCGATTCAATGGAATGGGGCCGGTGCC
TTCATTATCAATAATAATAAAACCAACTTGGATGCGTCAGTTTCCAGTATGCCTTATGCGGATAATAAGACCAAGCGGGT
GCAGGGCGAGGAGATTCCAACTGTCGCTAATGCCCTCATGGCTAAATCTACGCGTCAGTACAAGGACCGTGATCAGACAG
GCCAAGGGCGAACCTCCTGGACGCCGGCTGGTTGGCATCAGGTTCATGATTTGCCAGGAGAATACGACCATGCGGTGGAC
CGTGGGCACTTGCTTGGCTATGCCTTGATTGGTGGCTTAGATGGATTTGACGCCTCAACCAGCAATCCCAAGAATATTGC
CACTCAAACGGCCTGGTCCAATCAGGCTTATGAGGATTATTCTACTGGGCAAAACTACTATGAAACAAAAGTCCGCCGGG
CCTTGGACAAGAACAAACGTGTCCGCTACCGTGTCACACTGATCTATGCGGATGATGATGACCTGATTGCTCTAGGAAGT
CACCTGGAGGCTAAATCGTCAGACGGTAGCCTGGAATTCAACGTCTTTGTGCCAAATGTCCAGAGTGGACTCAGTATCAA
CTACCATAGTGGTGAGATCACGGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(79-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.748

91.697

0.603
  endA Streptococcus pneumoniae D39

65.748

91.697

0.603
  endA Streptococcus pneumoniae R6

65.748

91.697

0.603
  endA Streptococcus pneumoniae TIGR4

65.748

91.697

0.603