Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PP477_RS29485 Genome accession   NZ_CP116934
Coordinates   6310134..6310658 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain CUVET20-956     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6305134..6315658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP477_RS29470 (PP477_29455) aroB 6306250..6307356 (-) 1107 WP_003095831.1 3-dehydroquinate synthase -
  PP477_RS29475 (PP477_29460) aroK 6307406..6307924 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PP477_RS29480 (PP477_29465) pilQ 6307936..6310080 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  PP477_RS29485 (PP477_29470) comL/pilP 6310134..6310658 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PP477_RS29490 (PP477_29475) pilO 6310655..6311278 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  PP477_RS29495 (PP477_29480) pilN 6311275..6311871 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PP477_RS29500 (PP477_29485) pilM 6311871..6312935 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PP477_RS29505 (PP477_29490) - 6313120..6315591 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=714757 PP477_RS29485 WP_003095836.1 6310134..6310658(-) (comL/pilP) [Pseudomonas aeruginosa strain CUVET20-956]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=714757 PP477_RS29485 WP_003095836.1 6310134..6310658(-) (comL/pilP) [Pseudomonas aeruginosa strain CUVET20-956]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362