Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PP478_RS29145 Genome accession   NZ_CP116933
Coordinates   6298859..6299455 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain CUVET21-397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6293859..6304455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP478_RS29125 (PP478_29105) aroK 6294990..6295508 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PP478_RS29130 (PP478_29110) pilQ 6295520..6297664 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  PP478_RS29135 (PP478_29115) comL/pilP 6297718..6298242 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PP478_RS29140 (PP478_29120) pilO 6298239..6298862 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  PP478_RS29145 (PP478_29125) pilN 6298859..6299455 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PP478_RS29150 (PP478_29130) pilM 6299455..6300519 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PP478_RS29155 (PP478_29135) - 6300704..6303175 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=714663 PP478_RS29145 WP_003095839.1 6298859..6299455(-) (pilN) [Pseudomonas aeruginosa strain CUVET21-397]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=714663 PP478_RS29145 WP_003095839.1 6298859..6299455(-) (pilN) [Pseudomonas aeruginosa strain CUVET21-397]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369