Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FFJ14_RS22475 Genome accession   NZ_AP024126
Coordinates   4601633..4602100 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain NS-NP030     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4596633..4607100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFJ14_RS22430 (BvCmsNSNP030_4424) rplP 4596743..4597153 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  FFJ14_RS22435 (BvCmsNSNP030_4425) rpsC 4597166..4597867 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  FFJ14_RS22440 (BvCmsNSNP030_4426) rplV 4597885..4598217 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  FFJ14_RS22445 (BvCmsNSNP030_4427) rpsS 4598232..4598510 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  FFJ14_RS22450 (BvCmsNSNP030_4428) rplB 4598527..4599348 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  FFJ14_RS22455 (BvCmsNSNP030_4429) rplW 4599366..4599668 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  FFJ14_RS22460 (BvCmsNSNP030_4430) rplD 4599665..4600270 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  FFJ14_RS22465 (BvCmsNSNP030_4431) rplC 4600281..4600910 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  FFJ14_RS22470 (BvCmsNSNP030_4432) rpsJ 4600943..4601254 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  FFJ14_RS22475 (BvCmsNSNP030_4433) pilD 4601633..4602100 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  FFJ14_RS22480 (BvCmsNSNP030_4434) bfr 4602097..4602573 (-) 477 WP_000675515.1 bacterioferritin -
  FFJ14_RS22485 (BvCmsNSNP030_4435) bfd 4602646..4602840 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  FFJ14_RS22490 (BvCmsNSNP030_4436) tuf 4603023..4604207 (-) 1185 WP_000031783.1 elongation factor Tu -
  FFJ14_RS22495 (BvCmsNSNP030_4437) fusA 4604278..4606392 (-) 2115 WP_000124700.1 elongation factor G -
  FFJ14_RS22500 (BvCmsNSNP030_4438) rpsG 4606489..4606959 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=71466 FFJ14_RS22475 WP_000339836.1 4601633..4602100(+) (pilD) [Escherichia coli strain NS-NP030]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=71466 FFJ14_RS22475 WP_000339836.1 4601633..4602100(+) (pilD) [Escherichia coli strain NS-NP030]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment