Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   NQZ97_RS11785 Genome accession   NZ_CP102136
Coordinates   2409473..2410669 (+) Length   398 a.a.
NCBI ID   WP_043024644.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2404473..2415669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS11750 (NQZ97_11750) - 2406216..2406551 (+) 336 WP_306172866.1 helix-turn-helix domain-containing protein -
  NQZ97_RS11755 (NQZ97_11755) - 2406654..2407806 (+) 1153 Protein_2290 site-specific integrase -
  NQZ97_RS11775 (NQZ97_11775) - 2408112..2408795 (-) 684 WP_172145721.1 YoaK family protein -
  NQZ97_RS11780 (NQZ97_11780) rlmH 2408820..2409299 (-) 480 WP_002941741.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  NQZ97_RS11785 (NQZ97_11785) htrA 2409473..2410669 (+) 1197 WP_043024644.1 S1C family serine protease Regulator
  NQZ97_RS11790 (NQZ97_11790) spo0J 2410730..2411494 (+) 765 WP_004195351.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 41850.93 Da        Isoelectric Point: 4.5454

>NTDB_id=714655 NQZ97_RS11785 WP_043024644.1 2409473..2410669(+) (htrA) [Streptococcus suis strain M105052_S26]
MERIPYMKKYLKFAILFVIGFFGGLIGALSASFFQPQVQQANSAITSVSNVQYNNETSTTKAVEKVQNAVVSVINYQKSA
NNSLGVIFGNIESSDELAVAGEGSGVIYKKDGQYAYIVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISA
DKVTAVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSEDGQTISTNAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKITSSSVSSSGVAVEGMGFAIPANDAVAIINQLEKAGKVSRPALGVHMVNLTTLSTSQLEKAGLSNTEL
TSGVVIVSTQSGLPADGKLETFDVITEIDGETIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEELSE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=714655 NQZ97_RS11785 WP_043024644.1 2409473..2410669(+) (htrA) [Streptococcus suis strain M105052_S26]
ATGGAAAGGATTCCTTATATGAAAAAATATTTGAAATTTGCGATTTTATTTGTAATTGGATTTTTTGGGGGTCTTATCGG
AGCCTTATCAGCCTCTTTCTTCCAACCACAGGTGCAACAAGCAAATTCTGCTATCACTAGTGTCAGCAATGTTCAATATA
ATAATGAAACTTCCACCACAAAAGCTGTAGAGAAAGTACAAAATGCTGTTGTGTCTGTTATTAATTACCAAAAATCAGCC
AACAATAGTCTTGGTGTTATCTTTGGAAATATTGAATCATCTGACGAACTAGCCGTTGCTGGGGAGGGATCTGGTGTTAT
CTACAAAAAAGATGGTCAATATGCCTATATTGTGACAAATACGCATGTCATTAATAACGCAGAAAAGATTGATATTCTTT
TAGCATCTGGAGAAAAAATTAGCGGTGAACTCGTTGGTTCCGATACCTATTCTGATATAGCTGTTATAAAAATATCAGCA
GATAAAGTCACTGCTGTTGCTGAATTTGCTGATTCCGATACAATTAAAGTTGGAGAAACTGCTATCGCAATTGGTAGTCC
TCTAGGTAGCGTCTACGCTAATACAGTTACTCAAGGTATTATTTCTAGCCTGAGTCGGACAGTTACTTCACAATCAGAAG
ATGGTCAAACAATCTCAACCAACGCTATTCAAACCGATACAGCTATCAACCCTGGAAACTCTGGAGGACCATTGATTAAT
ATCCAAGGACAAGTTATTGGTATCACCTCTAGCAAAATCACCTCAAGTTCTGTAAGTAGCTCAGGGGTGGCTGTGGAAGG
GATGGGATTCGCTATTCCTGCAAATGATGCCGTAGCCATTATCAATCAACTTGAGAAAGCTGGAAAAGTTAGCCGACCTG
CTCTTGGAGTTCATATGGTTAACTTGACGACCTTGTCAACTAGTCAATTAGAAAAAGCTGGATTATCAAATACGGAATTA
ACATCCGGTGTCGTAATTGTCTCTACACAAAGTGGACTACCTGCAGATGGAAAATTAGAAACTTTTGATGTCATTACTGA
GATTGACGGAGAAACTATTCAAAATAAGAGTGACCTCCAGAGCGCTCTCTACAAACATCAAATTGGAGATACAATCACTG
TAACTTATTACCGCAATAATCAGAAACAAACTGTTGACATTAAGTTGACACATTCTACAGAAGAACTTAGCGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

60.453

99.749

0.603

  htrA Streptococcus gordonii str. Challis substr. CH1

60.253

99.246

0.598

  htrA Streptococcus pneumoniae D39

57.506

98.744

0.568

  htrA Streptococcus pneumoniae TIGR4

57.506

98.744

0.568

  htrA Streptococcus mitis NCTC 12261

57.506

98.744

0.568

  htrA Streptococcus pneumoniae R6

57.506

98.744

0.568

  htrA Streptococcus pneumoniae Rx1

57.506

98.744

0.568