NTDB

Overview

Name	endA	Type	Machinery gene
Locus tag	NQZ97_RS04650	Genome accession	NZ_CP102136
Coordinates	941732..942571 (+)	Length	279 a.a.
NCBI ID	WP_170238106.1	Uniprot ID	-
Organism	Streptococcus suis strain M105052_S26
Function	cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 936732..947571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ97_RS04620 (NQZ97_04620)	-	937197..938075 (+)	879	WP_256787291.1	F0F1 ATP synthase subunit gamma	-
NQZ97_RS04625 (NQZ97_04625)	atpD	938095..939501 (+)	1407	WP_002936008.1	F0F1 ATP synthase subunit beta	-
NQZ97_RS04630 (NQZ97_04630)	-	939511..939927 (+)	417	WP_002936007.1	F0F1 ATP synthase subunit epsilon	-
NQZ97_RS04635 (NQZ97_04635)	-	939987..940211 (+)	225	WP_012775178.1	DUF1146 family protein	-
NQZ97_RS04640 (NQZ97_04640)	murA	940235..941518 (+)	1284	WP_256787292.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
NQZ97_RS04645 (NQZ97_04645)	-	941511..941702 (+)	192	WP_002936005.1	DNA-directed RNA polymerase subunit beta	-
NQZ97_RS04650 (NQZ97_04650)	endA	941732..942571 (+)	840	WP_170238106.1	DNA/RNA non-specific endonuclease	Machinery gene
NQZ97_RS04655 (NQZ97_04655)	-	942758..944308 (+)	1551	WP_256787293.1	MFS transporter	-
NQZ97_RS04660 (NQZ97_04660)	-	944371..945399 (+)	1029	Protein_890	PfkB family carbohydrate kinase	-
NQZ97_RS04665 (NQZ97_04665)	uidA	945415..947214 (+)	1800	WP_256787294.1	beta-glucuronidase	-

Sequence

Protein

Download Length: 279 a.a. Molecular weight: 30167.42 Da Isoelectric Point: 6.9915

                                >NTDB_id=714637 NQZ97_RS04650 WP_170238106.1 941732..942571(+) (endA) [Streptococcus suis strain M105052_S26]

MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVANYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA

GAFIINGNKTDLDASVSSKPYADNKTKTVQGETVPTVANALLAKSTRQYKSREETGNGSTSWTPPGWHQVQDLDGSYDHA

IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALDKNKRVRYRVTLVYADEDDLVPV

GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide

Download Length: 840 bp

                                >NTDB_id=714637 NQZ97_RS04650 WP_170238106.1 941732..942571(+) (endA) [Streptococcus suis strain M105052_S26]

ATGGCGAAGAAAAATGTAAGAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA

TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTAATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC

CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT

GGAGCATTTATTATTAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGTAAGCCCTATGCGGATAATAAGACAAA

GACTGTGCAGGGGGAAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG

AAACAGGAAATGGTTCGACTTCATGGACTCCGCCTGGCTGGCATCAGGTACAGGATTTGGATGGATCCTATGATCATGCG

ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA

TATTGCAGTTCAAACAGCTTGGTCCAATCAGGCAAGGGCTGAGGATTCGACGGGGCAAAACTATTTTGAGAGTCAAGTTC

GTAAAGCTTTGGATAAGAACAAACGTGTTCGTTACCGCGTGACCTTGGTGTATGCTGATGAGGATGATTTGGTTCCAGTC

GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG

TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
endA	Streptococcus pneumoniae Rx1	74.576	84.588	0.631
endA	Streptococcus pneumoniae D39	74.576	84.588	0.631
endA	Streptococcus pneumoniae R6	74.576	84.588	0.631
endA	Streptococcus pneumoniae TIGR4	74.576	84.588	0.631

Detailed information NTG0714637