Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NQZ98_RS06165 Genome accession   NZ_CP102135
Coordinates   1214015..1214854 (-) Length   279 a.a.
NCBI ID   WP_044666904.1    Uniprot ID   A0A123UDV6
Organism   Streptococcus suis strain M106471_S40     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1209015..1219854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS06150 (NQZ98_06150) uidA 1209375..1211174 (-) 1800 WP_044686557.1 beta-glucuronidase -
  NQZ98_RS06155 (NQZ98_06155) - 1211190..1212218 (-) 1029 WP_014637810.1 sugar kinase -
  NQZ98_RS06160 (NQZ98_06160) - 1212275..1213828 (-) 1554 WP_044666906.1 MFS transporter -
  NQZ98_RS06165 (NQZ98_06165) endA 1214015..1214854 (-) 840 WP_044666904.1 DNA/RNA non-specific endonuclease Machinery gene
  NQZ98_RS06170 (NQZ98_06170) - 1214884..1215075 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  NQZ98_RS06175 (NQZ98_06175) murA 1215068..1216351 (-) 1284 WP_002936006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NQZ98_RS06180 (NQZ98_06180) - 1216375..1216599 (-) 225 WP_044666918.1 DUF1146 family protein -
  NQZ98_RS06185 (NQZ98_06185) - 1216659..1217075 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  NQZ98_RS06190 (NQZ98_06190) atpD 1217085..1218491 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  NQZ98_RS06195 (NQZ98_06195) - 1218511..1219389 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30161.37 Da        Isoelectric Point: 6.2370

>NTDB_id=714583 NQZ98_RS06165 WP_044666904.1 1214015..1214854(-) (endA) [Streptococcus suis strain M106471_S40]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFIPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=714583 NQZ98_RS06165 WP_044666904.1 1214015..1214854(-) (endA) [Streptococcus suis strain M106471_S40]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCTTAGAGTTCAATGTGTTCATTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A123UDV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.492

84.588

0.588
  endA Streptococcus pneumoniae D39

69.492

84.588

0.588
  endA Streptococcus pneumoniae R6

69.492

84.588

0.588
  endA Streptococcus pneumoniae TIGR4

69.492

84.588

0.588