Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NQZ84_RS06575 Genome accession   NZ_CP102094
Coordinates   1343523..1344362 (-) Length   279 a.a.
NCBI ID   WP_257049269.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1338523..1349362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS06560 (NQZ84_06560) uidA 1338884..1340683 (-) 1800 WP_257049273.1 beta-glucuronidase -
  NQZ84_RS06565 (NQZ84_06565) - 1340699..1341727 (-) 1029 WP_257049271.1 sugar kinase -
  NQZ84_RS06570 (NQZ84_06570) - 1341783..1343336 (-) 1554 WP_074414199.1 MFS transporter -
  NQZ84_RS06575 (NQZ84_06575) endA 1343523..1344362 (-) 840 WP_257049269.1 DNA/RNA non-specific endonuclease Machinery gene
  NQZ84_RS06580 (NQZ84_06580) - 1344392..1344583 (-) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  NQZ84_RS06585 (NQZ84_06585) murA 1344576..1345859 (-) 1284 WP_024413088.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NQZ84_RS06590 (NQZ84_06590) - 1345884..1346108 (-) 225 WP_012775178.1 DUF1146 family protein -
  NQZ84_RS06595 (NQZ84_06595) - 1346168..1346584 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  NQZ84_RS06600 (NQZ84_06600) atpD 1346594..1348000 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  NQZ84_RS06605 (NQZ84_06605) - 1348020..1348898 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30133.32 Da        Isoelectric Point: 6.2370

>NTDB_id=714299 NQZ84_RS06575 WP_257049269.1 1343523..1344362(-) (endA) [Streptococcus suis strain 12RC1]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQAHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQISTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEITVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=714299 NQZ84_RS06575 WP_257049269.1 1343523..1344362(-) (endA) [Streptococcus suis strain 12RC1]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACTGTCCAGGGAGAGACGGTTCCAACCGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGGCCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAATTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAATTATCATAGTGGGGAAATTACGGTGAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.763

84.588

0.599
  endA Streptococcus pneumoniae D39

70.763

84.588

0.599
  endA Streptococcus pneumoniae R6

70.763

84.588

0.599
  endA Streptococcus pneumoniae TIGR4

70.763

84.588

0.599