Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   NQD65_RS01020 Genome accession   NZ_CP101996
Coordinates   163636..164568 (+) Length   310 a.a.
NCBI ID   WP_000138506.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain BCJB1835     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 158636..169568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD65_RS01000 (NQD65_01000) - 158848..160503 (+) 1656 WP_001118749.1 peptide ABC transporter substrate-binding protein -
  NQD65_RS01005 (NQD65_01005) - 160622..161536 (+) 915 WP_000598965.1 ABC transporter permease -
  NQD65_RS01010 (NQD65_01010) - 161546..162577 (+) 1032 WP_000764052.1 ABC transporter permease -
  NQD65_RS01015 (NQD65_01015) oppD 162590..163636 (+) 1047 WP_000410286.1 ABC transporter ATP-binding protein Regulator
  NQD65_RS01020 (NQD65_01020) amiF 163636..164568 (+) 933 WP_000138506.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 34855.67 Da        Isoelectric Point: 6.7314

>NTDB_id=713992 NQD65_RS01020 WP_000138506.1 163636..164568(+) (amiF) [Streptococcus agalactiae strain BCJB1835]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTPQEAEEYKKQIL

Nucleotide


Download         Length: 933 bp        

>NTDB_id=713992 NQD65_RS01020 WP_000138506.1 163636..164568(+) (amiF) [Streptococcus agalactiae strain BCJB1835]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGAGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGATATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGGAAACTGTTAGAAGTTGGAACATCTGATGAT
GTTTATAACAATCCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACCCCTGGTCATT
TTGTTTTATCTACACCCCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-267)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.545

99.355

0.542
  amiF Streptococcus thermophilus LMG 18311

54.221

99.355

0.539
  amiF Streptococcus salivarius strain HSISS4

54.426

98.387

0.535