Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   K6J71_RS00260 Genome accession   NZ_AP018783
Coordinates   55761..56048 (-) Length   95 a.a.
NCBI ID   WP_005648029.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-3 isolate 15H03     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50761..61048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J71_RS00250 (CHBNV3_00500) nrdR 51831..52280 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  K6J71_RS00255 (CHBNV3_00510) recC 52335..55715 (-) 3381 WP_005666025.1 exodeoxyribonuclease V subunit gamma -
  K6J71_RS00260 (CHBNV3_00520) comQ 55761..56048 (-) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  K6J71_RS00265 (CHBNV3_00530) comP 56041..56724 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  K6J71_RS00270 (CHBNV3_00540) comO 56739..57455 (-) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  K6J71_RS00275 (CHBNV3_00550) comN 57455..57967 (-) 513 WP_005648034.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  K6J71_RS00280 (CHBNV3_00560) suhB 58167..58970 (+) 804 WP_005648036.1 inositol-1-monophosphatase -
  K6J71_RS00285 (CHBNV3_00570) nrfE 59079..60986 (+) 1908 WP_005666026.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11003.78 Da        Isoelectric Point: 9.2205

>NTDB_id=71371 K6J71_RS00260 WP_005648029.1 55761..56048(-) (comQ) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
MNKGISFITLLFSLALFSVLFLVFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRIQCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=71371 K6J71_RS00260 WP_005648029.1 55761..56048(-) (comQ) [Haemophilus influenzae strain CHBN-V-3 isolate 15H03]
ATGAATAAAGGAATATCTTTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCAATGTGAAAATGAACGT
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

96.842

100

0.968

Multiple sequence alignment