Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   PND17_RS02115 Genome accession   NZ_CP116772
Coordinates   397888..398631 (-) Length   247 a.a.
NCBI ID   WP_164178279.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 392888..403631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS02085 (PND17_02085) - 393159..394103 (-) 945 WP_271295296.1 TIGR01212 family radical SAM protein -
  PND17_RS02090 (PND17_02090) sepM 394188..395264 (-) 1077 WP_022096499.1 SepM family pheromone-processing serine protease Regulator
  PND17_RS02095 (PND17_02095) coaD 395242..395739 (-) 498 WP_271298120.1 pantetheine-phosphate adenylyltransferase -
  PND17_RS02100 (PND17_02100) rsmD 395773..396372 (-) 600 Protein_409 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PND17_RS02105 (PND17_02105) trxB 396463..397416 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  PND17_RS02110 (PND17_02110) - 397449..397673 (-) 225 WP_002951743.1 DUF4059 family protein -
  PND17_RS02115 (PND17_02115) amiE 397888..398631 (-) 744 WP_164178279.1 amino acid ABC transporter ATP-binding protein Regulator
  PND17_RS02120 (PND17_02120) - 398631..399377 (-) 747 WP_271298149.1 amino acid ABC transporter permease -
  PND17_RS02125 (PND17_02125) - 399771..400601 (-) 831 WP_180477138.1 transporter substrate-binding domain-containing protein -
  PND17_RS02130 (PND17_02130) - 401172..401405 (-) 234 WP_002947030.1 hypothetical protein -
  PND17_RS02135 (PND17_02135) dinB 401703..402806 (-) 1104 WP_271298121.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27733.86 Da        Isoelectric Point: 5.4718

>NTDB_id=712874 PND17_RS02115 WP_164178279.1 397888..398631(-) (amiE) [Streptococcus thermophilus strain strain TSGB 4141]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=712874 PND17_RS02115 WP_164178279.1 397888..398631(-) (amiE) [Streptococcus thermophilus strain strain TSGB 4141]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364