Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PND17_RS00075 Genome accession   NZ_CP116772
Coordinates   13816..15552 (+) Length   578 a.a.
NCBI ID   WP_271298499.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 8816..20552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS00035 (PND17_00035) - 9554..9805 (+) 252 WP_197926866.1 hypothetical protein -
  PND17_RS00040 (PND17_00040) - 10045..10290 (+) 246 WP_024704010.1 ABC transporter substrate-binding protein -
  PND17_RS00045 (PND17_00045) - 10397..10606 (+) 210 WP_271298109.1 ABC transporter permease -
  PND17_RS00050 (PND17_00050) - 10607..10768 (+) 162 WP_271298108.1 ABC transporter permease -
  PND17_RS00055 (PND17_00055) - 10822..11112 (+) 291 WP_164177942.1 ABC transporter permease -
  PND17_RS00060 (PND17_00060) - 11109..11327 (+) 219 WP_271295664.1 ABC transporter permease -
  PND17_RS00065 (PND17_00065) rplJ 11618..12121 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  PND17_RS00070 (PND17_00070) rplL 12196..12564 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  PND17_RS00075 (PND17_00075) rcrP 13816..15552 (+) 1737 WP_271298499.1 ABC transporter ATP-binding protein Regulator
  PND17_RS00080 (PND17_00080) rcrQ 15565..17352 (+) 1788 WP_271298106.1 ABC transporter ATP-binding protein Regulator
  PND17_RS00085 (PND17_00085) queA 17450..18493 (-) 1044 WP_271298105.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  PND17_RS00090 (PND17_00090) - 18643..19344 (+) 702 WP_271298104.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64797.75 Da        Isoelectric Point: 5.7785

>NTDB_id=712855 PND17_RS00075 WP_271298499.1 13816..15552(+) (rcrP) [Streptococcus thermophilus strain strain TSGB 4141]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQFMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTSLTE
PLFVQIIIAMIVAIVWFALNPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKAGETIAFIGSMGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDIYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=712855 PND17_RS00075 WP_271298499.1 13816..15552(+) (rcrP) [Streptococcus thermophilus strain strain TSGB 4141]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTATCCTAAGTGGCTAGCGATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGAATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGTTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTAGTTTAACAGAG
CCACTTTTTGTACAAATCATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAACTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAAACTATTGCCTTTATTGGGTCTATGGGCTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATTGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATATCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.377

91.696

0.37