Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NP439_RS12315 Genome accession   NZ_CP101914
Coordinates   2512260..2514596 (+) Length   778 a.a.
NCBI ID   WP_256710233.1    Uniprot ID   -
Organism   Oceanobacillus jeddahense strain QA-1986 374     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2507260..2519596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP439_RS12295 (NP439_12295) cymR 2508613..2509038 (+) 426 WP_040981608.1 cysteine metabolism transcriptional regulator CymR -
  NP439_RS12300 (NP439_12300) - 2509277..2510419 (+) 1143 WP_256710230.1 cysteine desulfurase family protein -
  NP439_RS12305 (NP439_12305) mnmA 2510433..2511545 (+) 1113 WP_256710231.1 tRNA 2-thiouridine(34) synthase MnmA -
  NP439_RS12310 (NP439_12310) - 2511576..2512247 (+) 672 WP_040981603.1 tetratricopeptide repeat protein -
  NP439_RS12315 (NP439_12315) recD2 2512260..2514596 (+) 2337 WP_256710233.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NP439_RS12320 (NP439_12320) - 2515523..2515711 (+) 189 WP_040981598.1 hypothetical protein -
  NP439_RS12325 (NP439_12325) - 2515759..2516823 (+) 1065 WP_256710234.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87771.25 Da        Isoelectric Point: 4.9725

>NTDB_id=712831 NP439_RS12315 WP_256710233.1 2512260..2514596(+) (recD2) [Oceanobacillus jeddahense strain QA-1986 374]
MGNQIETKEALPFVTGTIINTIFRNEAEHFSIVRIKITKTNLDYEDKEIIVKGYFDQLQDQTAYCFYGSMEKHPRYGSQL
KVQSYETILPTTKDGLVQYLSSDLFYGVGKKSALKIVEALGESAVSKIIDNPSVLDNVSGVSKETGKRLAERLRENQGFE
RVAVKLSEYGIGLKMAQVIYQTYRDEALEVLEKDPYQYVFDIEGFGFKMADQIASGQGISHTHESRIGAGVIYILQQSIQ
AGHVYLPFEKCMEEVVHLLRLPNPDQNTVSEVIMQLNTKKQVIVMEERVYLPSLYYAEDNFTASLKKILTKPIEDEVPLS
ELLKITGDIEEEESLSYGKEQFDAIVQAIHSKIMILTGGPGTGKTTVITGIIQAFAKIHELSLNLSDYQKKDSFPFILTA
PTGRAAKRMSESTGLPAVTIHRLLGWNGMGSFEKDEHEPLSGKLLIVDEFSMVDTWLANHLFKAIPDTMQVILVGDEDQL
PSVGPGQVLTDLMKSDVLPVISLTDVYRQKEGSKIIQLAHQIKNTNCDKNALENARDFSFISCHDYQMVNVLTSIIDKAQ
KKGIDPSSIQILSPMYRSQAGIHAINESLQQLINPPGEKKREIAFHDVVYRVGDRVIQLINQPEDGIFNGDIGEIVAIFK
AEENVENEEQIVIAFEDKEVIFIRKDYNNFTHAFCISIHKSQGSEFPIVILPVVYSHHRMLRKNLLYTAITRGKESLIIC
GEKEAFIKGVQTEDTNRRYTSLQEMLSIQLANQKAEKKEYETVEDIPEEELSPYDFMD

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=712831 NP439_RS12315 WP_256710233.1 2512260..2514596(+) (recD2) [Oceanobacillus jeddahense strain QA-1986 374]
ATGGGAAACCAGATAGAAACAAAGGAAGCACTGCCTTTTGTAACGGGAACTATCATAAATACCATTTTTCGTAATGAGGC
AGAGCATTTCTCTATCGTCCGAATTAAAATCACAAAAACAAACCTTGATTATGAAGATAAAGAAATCATTGTGAAAGGGT
ATTTTGATCAATTACAAGATCAGACTGCCTATTGTTTTTATGGATCAATGGAAAAGCATCCCCGCTATGGTTCACAATTA
AAAGTACAATCCTATGAGACAATATTGCCAACAACAAAGGATGGTCTTGTTCAATACCTGTCCAGTGACTTATTTTATGG
AGTCGGCAAAAAAAGTGCCTTAAAAATTGTTGAAGCGTTAGGAGAAAGCGCAGTTTCGAAAATTATTGATAATCCATCTG
TTTTAGACAACGTTTCTGGCGTATCAAAAGAAACTGGTAAGAGACTGGCTGAGCGCCTCAGGGAAAATCAAGGGTTTGAA
CGCGTTGCAGTTAAATTATCAGAATATGGAATTGGACTGAAAATGGCTCAGGTTATTTACCAGACCTATCGCGATGAAGC
ATTAGAAGTTCTGGAGAAGGATCCATATCAATATGTTTTTGATATTGAAGGTTTTGGATTTAAAATGGCAGATCAAATAG
CCTCTGGGCAAGGTATTTCACATACCCATGAAAGCCGGATTGGTGCAGGAGTTATTTATATCCTTCAACAAAGTATTCAG
GCAGGACATGTTTATCTTCCGTTTGAAAAATGTATGGAAGAGGTGGTTCATTTACTGCGTCTTCCCAATCCCGATCAGAA
TACTGTTTCCGAAGTTATTATGCAATTGAATACAAAGAAACAGGTCATTGTTATGGAAGAACGTGTTTATTTACCTTCTT
TATATTATGCTGAGGATAATTTTACGGCTAGCTTAAAAAAAATTCTTACGAAACCGATAGAGGATGAAGTGCCTTTGTCG
GAGCTTTTGAAAATAACGGGTGATATTGAGGAAGAAGAGTCATTAAGTTATGGAAAAGAGCAATTTGATGCTATCGTTCA
AGCGATCCACTCGAAAATTATGATTTTAACGGGTGGTCCAGGGACTGGCAAAACGACAGTGATCACGGGAATTATCCAAG
CATTTGCCAAAATCCATGAGCTTTCTTTAAATCTATCGGATTATCAGAAAAAAGATAGCTTTCCGTTTATTCTAACAGCC
CCTACCGGACGTGCTGCAAAAAGAATGTCCGAATCTACTGGTTTGCCGGCAGTTACAATTCACCGATTACTCGGCTGGAA
TGGAATGGGCAGTTTTGAAAAAGATGAGCACGAACCTTTATCCGGAAAGCTGCTGATTGTTGATGAATTTTCTATGGTAG
ATACATGGTTAGCAAACCATTTATTTAAAGCTATTCCGGATACCATGCAGGTTATCCTGGTTGGAGATGAAGATCAGCTT
CCATCAGTGGGCCCGGGTCAAGTTTTAACCGATCTGATGAAAAGTGACGTGTTGCCAGTTATCTCTTTAACGGATGTATA
TCGTCAAAAAGAAGGTTCTAAAATTATTCAGCTTGCCCATCAAATTAAAAATACGAATTGTGATAAAAATGCGTTGGAGA
ATGCACGTGATTTCAGTTTTATTTCCTGCCATGATTATCAGATGGTCAACGTTTTGACATCGATTATTGATAAGGCGCAA
AAAAAAGGAATTGATCCATCTTCTATCCAGATCCTATCCCCCATGTATCGTTCGCAAGCAGGAATTCATGCGATTAATGA
ATCGTTGCAGCAATTAATTAATCCTCCTGGTGAAAAGAAACGGGAGATTGCTTTTCACGATGTTGTTTATCGCGTCGGAG
ACCGTGTGATTCAATTAATTAATCAACCGGAAGACGGGATATTTAATGGAGATATTGGAGAAATAGTTGCTATTTTTAAG
GCTGAGGAAAATGTTGAAAATGAGGAACAAATTGTAATAGCTTTTGAAGATAAAGAAGTTATCTTTATTCGAAAAGATTA
TAATAACTTCACACATGCATTCTGTATTTCCATTCATAAATCACAAGGAAGCGAATTTCCAATTGTTATTCTGCCGGTTG
TTTATTCCCATCATCGCATGCTGCGAAAAAACCTCCTATATACGGCAATTACAAGAGGAAAGGAATCGTTGATTATTTGC
GGTGAAAAAGAAGCATTTATTAAAGGAGTTCAAACCGAAGATACGAACCGGAGATACACCTCATTGCAGGAAATGCTGAG
TATTCAACTAGCCAATCAGAAAGCAGAGAAAAAAGAATATGAGACGGTAGAGGATATACCAGAGGAAGAATTATCTCCCT
ATGATTTTATGGATTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(337-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.077

100

0.482