Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NP431_RS00690 Genome accession   NZ_CP101905
Coordinates   151021..151743 (-) Length   240 a.a.
NCBI ID   WP_024372766.1    Uniprot ID   A0AAN1CUN6
Organism   Vibrio natriegens strain 14048     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146021..156743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP431_RS00665 (NP431_00665) - 147199..147690 (+) 492 WP_020335694.1 type II secretion system protein M -
  NP431_RS00670 (NP431_00670) - 147692..148453 (+) 762 WP_024372765.1 type II secretion system protein N -
  NP431_RS00675 (NP431_00675) cysQ 148738..149565 (-) 828 WP_020335696.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NP431_RS00680 (NP431_00680) nudE 149610..150179 (-) 570 WP_020335697.1 ADP compounds hydrolase NudE -
  NP431_RS00685 (NP431_00685) nfuA 150340..150924 (-) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  NP431_RS00690 (NP431_00690) comF 151021..151743 (-) 723 WP_024372766.1 ComF family protein Machinery gene
  NP431_RS00695 (NP431_00695) bioH 151828..152595 (+) 768 WP_024372767.1 pimeloyl-ACP methyl ester esterase BioH -
  NP431_RS00700 (NP431_00700) - 152707..153171 (+) 465 WP_020335700.1 hypothetical protein -
  NP431_RS00705 (NP431_00705) - 153254..155584 (-) 2331 WP_020335701.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27529.72 Da        Isoelectric Point: 9.2040

>NTDB_id=712619 NP431_RS00690 WP_024372766.1 151021..151743(-) (comF) [Vibrio natriegens strain 14048]
MLSHHWQNIMRRVLGSQCGLCRLPLKTAQSPNALRWCSHCFQYLNPIRRCQHCGLAMQETERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHVEALTQLLAARISSPATLITSVPLHWRRYLSRGFNQSDVLARHLAAHLHRHFDPK
VFRRIQYANSQRGHTKTQREQNLQGAFTLNKKPIYKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=712619 NP431_RS00690 WP_024372766.1 151021..151743(-) (comF) [Vibrio natriegens strain 14048]
ATGTTATCTCATCACTGGCAAAACATCATGCGTCGCGTGCTCGGTAGTCAATGTGGTTTGTGCAGGCTGCCACTGAAAAC
AGCACAATCACCGAACGCTCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGGTGCCAACATTGTG
GTTTGGCTATGCAGGAAACAGAAAGGAGCGACACGGTGTGTGGCGAGTGCTTGGCCGAACCACCGCCCTGGCAGCGACTC
ATCACTCTCGGAGACTATGCGTTTCCTCTGTCACGCGAGGTTCAACGCTTTAAAGATCATGGCGAGAGTTGGCACGTAGA
AGCATTAACGCAATTGCTCGCGGCACGTATTTCTTCTCCAGCGACACTGATTACCAGCGTTCCACTGCACTGGCGACGCT
ATTTATCGCGTGGATTCAATCAAAGTGATGTACTTGCCAGACACTTGGCAGCCCATCTGCATCGCCATTTTGACCCTAAA
GTATTTCGTCGTATCCAATACGCAAACTCTCAGAGAGGCCATACTAAAACCCAACGAGAGCAAAACTTGCAAGGTGCGTT
TACCCTCAATAAAAAGCCGATTTATAAACACGTGGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.88

100

0.692
  comF Vibrio cholerae strain A1552

51.055

98.75

0.504