Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NPS25_RS08375 Genome accession   NZ_CP101904
Coordinates   1674926..1675705 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Ba-0321     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1669926..1680705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPS25_RS08355 (NPS25_08355) trmFO 1670613..1671920 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NPS25_RS08360 (NPS25_08360) xerC 1671990..1672907 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NPS25_RS08365 (NPS25_08365) hslV 1672923..1673468 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NPS25_RS08370 (NPS25_08370) hslU 1673485..1674888 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  NPS25_RS08375 (NPS25_08375) codY 1674926..1675705 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NPS25_RS08380 (NPS25_08380) flgB 1676059..1676448 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NPS25_RS08385 (NPS25_08385) flgC 1676448..1676900 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  NPS25_RS08390 (NPS25_08390) fliE 1676911..1677231 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NPS25_RS08395 (NPS25_08395) fliF 1677274..1678884 (+) 1611 WP_033574574.1 flagellar basal-body MS-ring/collar protein FliF -
  NPS25_RS08400 (NPS25_08400) fliG 1678897..1679913 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NPS25_RS08405 (NPS25_08405) fliH 1679906..1680661 (+) 756 WP_015417466.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=712575 NPS25_RS08375 WP_003154263.1 1674926..1675705(+) (codY) [Bacillus velezensis strain Ba-0321]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=712575 NPS25_RS08375 WP_003154263.1 1674926..1675705(+) (codY) [Bacillus velezensis strain Ba-0321]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTGAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471