Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PMJ93_RS30375 Genome accession   NZ_CP116721
Coordinates   6458259..6458783 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2867     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6453259..6463783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMJ93_RS30360 (PMJ93_30360) aroB 6454375..6455481 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PMJ93_RS30365 (PMJ93_30365) aroK 6455531..6456049 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PMJ93_RS30370 (PMJ93_30370) pilQ 6456061..6458205 (-) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  PMJ93_RS30375 (PMJ93_30375) comL/pilP 6458259..6458783 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PMJ93_RS30380 (PMJ93_30380) pilO 6458780..6459403 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PMJ93_RS30385 (PMJ93_30385) pilN 6459400..6459996 (-) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  PMJ93_RS30390 (PMJ93_30390) pilM 6459996..6461060 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PMJ93_RS30395 (PMJ93_30395) - 6461245..6463713 (+) 2469 WP_272223607.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=712470 PMJ93_RS30375 WP_003095836.1 6458259..6458783(-) (comL/pilP) [Pseudomonas aeruginosa strain 2867]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=712470 PMJ93_RS30375 WP_003095836.1 6458259..6458783(-) (comL/pilP) [Pseudomonas aeruginosa strain 2867]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362