Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   K6J62_RS00275 Genome accession   NZ_AP018779
Coordinates   57436..57948 (-) Length   170 a.a.
NCBI ID   WP_110431766.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-8 isolate 10H15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52436..62948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J62_RS00260 (CHBNIII8_00520) comQ 55757..56044 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  K6J62_RS00265 (CHBNIII8_00530) comP 56037..56720 (-) 684 WP_110431768.1 DUF2572 family protein Machinery gene
  K6J62_RS00270 (CHBNIII8_00540) comO 56717..57436 (-) 720 WP_110431767.1 type II secretion system protein J Machinery gene
  K6J62_RS00275 (CHBNIII8_00550) comN 57436..57948 (-) 513 WP_110431766.1 type II secretion system protein Machinery gene
  K6J62_RS00280 (CHBNIII8_00560) suhB 58148..58951 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  K6J62_RS00285 (CHBNIII8_00570) nrfE 59060..60967 (+) 1908 WP_110431765.1 heme lyase NrfEFG subunit NrfE -
  K6J62_RS00290 (CHBNIII8_00580) - 60967..61497 (+) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -
  K6J62_RS00295 (CHBNIII8_00590) nrfF 61494..62648 (+) 1155 WP_110431764.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19929.26 Da        Isoelectric Point: 8.7271

>NTDB_id=71233 K6J62_RS00275 WP_110431766.1 57436..57948(-) (comN) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
MQKGVTLVELLIGLAIISIVLSFVVPLWQTDLPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLVTQQWCLTAQ
VKNDRTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=71233 K6J62_RS00275 WP_110431766.1 57436..57948(-) (comN) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGTGCTGAGTTTTGTCGTGCCATT
ATGGCAAACCGATTTACCTAAAACGATTTTAGCTAAAGAGCAACATCGCCTGTATTTATTTCTACGTCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGTTACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATGATCGAACTTGCGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

94.118

100

0.941

Multiple sequence alignment