Detailed information NTG0712241

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: NPA43_RS12010
• Genome accession: NZ_CP101833
• Coordinates: 2349882..2352266 (-)
• Length: 794 a.a.
• NCBI ID: WP_099727752.1
• Uniprot ID: A0A2G8ISR7
• Organism: Bacillus pumilus strain NDY-10
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2344882..2357266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NPA43_RS11975 (NPA43_11975)	-	2345987..2346715 (+)	729	WP_099727748.1	amino acid ABC transporter ATP-binding protein	-
NPA43_RS11980 (NPA43_11980)	-	2346729..2347538 (+)	810	WP_283775112.1	transporter substrate-binding domain-containing protein	-
NPA43_RS11985 (NPA43_11985)	-	2347619..2348272 (+)	654	WP_099727750.1	amino acid ABC transporter permease	-
NPA43_RS11990 (NPA43_11990)	-	2348288..2348938 (+)	651	WP_099727751.1	amino acid ABC transporter permease	-
NPA43_RS11995 (NPA43_11995)	-	2348975..2349106 (-)	132	WP_078061693.1	YrzQ family protein	-
NPA43_RS12000 (NPA43_12000)	-	2349127..2349318 (-)	192	WP_003216308.1	hypothetical protein	-
NPA43_RS12005 (NPA43_12005)	-	2349332..2349790 (-)	459	WP_230030506.1	prc-barrel domain-containing protein	-
NPA43_RS12010 (NPA43_12010)	recD2	2349882..2352266 (-)	2385	WP_099727752.1	ATP-dependent RecD-like DNA helicase	Machinery gene
NPA43_RS12015 (NPA43_12015)	-	2352286..2352939 (-)	654	WP_230030507.1	lipopolysaccharide assembly protein LapB	-
NPA43_RS12020 (NPA43_12020)	mnmA	2353002..2354120 (-)	1119	WP_230030508.1	tRNA 2-thiouridine(34) synthase MnmA	-
NPA43_RS12025 (NPA43_12025)	-	2354216..2355358 (-)	1143	WP_256498841.1	cysteine desulfurase family protein	-
NPA43_RS12030 (NPA43_12030)	cymR	2355377..2355796 (-)	420	WP_099727806.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89089.49 Da
• Isoelectric Point: 5.2639

>NTDB_id=712241 NPA43_RS12010 WP_099727752.1 2349882..2352266(-) (recD2) [Bacillus pumilus strain NDY-10]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEDETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEDIVGQLGNQTLHKIMRDPSVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTSNEYKVTEMDVANQILALGEGKEMIIEDDRCYHPSLFYAERSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASHAVPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTRRLVQTEEVMDAELAALQKELPFSVHDANIGMEGITPFDFMQE

Nucleotide

• Length: 2385 bp

>NTDB_id=712241 NPA43_RS12010 WP_099727752.1 2349882..2352266(-) (recD2) [Bacillus pumilus strain NDY-10]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAGCCGTTTTTAAAAGGGACGGTTCAAGCTGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCTGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAAGACGAAACCTACACCTTTTACGGCAAAGTCACAAGCCATCCGAAATTTGGTGAA
CAGTTTCAGGCGACTCATTTTCAAAAGGAAGTGCCGACAACAAAGCAAGGGATTATTCATTATCTCTCAAGTGACTTATT
CGAAGGGATAGGGAAAAAGACAGCGGAAGACATTGTGGGGCAGCTCGGCAATCAGACGCTTCATAAAATTATGCGTGACC
CGTCAGTTTTGTATGACGTTCCGCGCCTATCAAAAAAGAAAGCAGATAAGCTGGCTGCAGCGCTTCAGGAGCATCAAGGG
CTGGAACAAATTATGATCAGCCTGAATCAATATGGCTTTGGCCCGCAGCTCAGTATGAAGATTTATCAAGTGTACGAGAG
TGAAACCTTGCAAAAGATCGAGGAAAATCCCTATCAGCTCGTCAAAGATGTAGAGGGGATCGGATTTATTAAAGCAGATG
AGCTCGGTGCTAGAACAGGGATATCAGGAAATGACCCAGAGCGAATCCGTGCAGCCTTGCTATATACAGTCGAGACAGCG
AGCCTTCAGGACGGTCATACGTACATACAAACAAAAGATCTGATCGTTGAAACCCGTAAGCTGCTCAATCAAACAAGCAA
TGAGTACAAAGTGACTGAAATGGACGTTGCCAATCAGATTTTGGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
ACCGCTGTTATCATCCGTCCTTATTTTATGCGGAGCGAAGTGTCGCCAAACGCATTCAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTTCTTGCACTTGGTGAGCTGGAGGAAAGGCTAGGCGTGCAGTATGCTCC
GACACAAAAGGAAGCGATTCAAAAGGCGCTCATGTCCCCGATGCTGCTTTTAACAGGCGGGCCTGGGACAGGGAAAACAA
CCGTCATTAAAGGAATTGTCGAGCTCTATAGCGATCTTCACGGTGTATCTCTTGATCCGAGTGATTATAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGGGCGGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTGAC
CATTCATCGCCTGCTAGGCTGGAATGGATCAGAGGGCTTCTCACATGATGAGGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCGAGTATGCTAGATATTTGGCTTGCGAATCATTTGTTTAAAGCGATCCCTGATCACATTCAAGTCATT
ATGGTAGGAGATGAACATCAGCTTCCGTCTGTCGGACCGGGCCAAGTCTTAAGAGACTTACTTGCGTCACATGCTGTACC
AGCTGTTACGTTAACTGATATTTACCGGCAGGCAGATGGTTCTACCATTGTTGAACTTGCACACGATATGAAAAATGGCG
TCCTGCCAAAAGATATCACTGCACGCTCGAAGGATCGGTCCTTCATTCAATGTTCAGCTGATCAAATGAAAGAAGTCATT
GAAAAAGTTGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCAAAAGATATTCAGGTGCTGGCGCCCATGTATAAAGGAAA
AGCAGGCATCAATGAGCTCAATAAAATGCTTCAGCACATTTTGAATCCTAAAAAGCCAAAAGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACGGGAGATAAGGTGCTGCAGCTTGTGAATCAGCCGGAAAACAACATTTTTAACGGTGACATT
GGTGAAATTGTCTCGATTTTTTATGCGAAAGAAAACACAGAAAAAGAAGACATGGCTGTGATTTCCTTTGATGGGAACGA
AATCACCTTTACGAAAAAAGATTTTCATCAATTTACCCATGCCTATTGCTGCTCCATTCACAAATCACAAGGCAGTGAAT
TTCCCATCGTTGTGCTGCCAGTCGTAAGAAGCTATTACCGAATGCTTCGCCGAAATTTGCTGTACACAGCCATTACACGA
AGCAAAAAGTTTTTAATTCTGTGCGGCGAAGAATCAGCACTGGAGTGGGGCGTGAAAAATAATGAGGATTCCCTCAGACA
AACGTCCTTAACGAGGCGCCTTGTTCAAACCGAAGAGGTCATGGATGCGGAGCTTGCAGCGCTCCAAAAAGAGCTTCCGT
TTAGCGTACATGACGCAAATATTGGCATGGAGGGAATCACTCCGTTTGATTTTATGCAAGAGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (345-553)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

3D structure

• AlphaFold DB: A0A2G8ISR7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.648	100	0.798