Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NPA43_RS07700 Genome accession   NZ_CP101833
Coordinates   1537860..1538639 (+) Length   259 a.a.
NCBI ID   WP_099725869.1    Uniprot ID   A0A2G8IYU4
Organism   Bacillus pumilus strain NDY-10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1532860..1543639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS07680 (NPA43_07680) trmFO 1533564..1534868 (+) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NPA43_RS07685 (NPA43_07685) xerC 1534931..1535848 (+) 918 WP_099725871.1 tyrosine recombinase XerC -
  NPA43_RS07690 (NPA43_07690) hslV 1535863..1536408 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  NPA43_RS07695 (NPA43_07695) hslU 1536425..1537825 (+) 1401 WP_230030146.1 HslU--HslV peptidase ATPase subunit -
  NPA43_RS07700 (NPA43_07700) codY 1537860..1538639 (+) 780 WP_099725869.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NPA43_RS07705 (NPA43_07705) flgB 1538928..1539317 (+) 390 WP_180275453.1 flagellar basal body rod protein FlgB -
  NPA43_RS07710 (NPA43_07710) flgC 1539317..1539769 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  NPA43_RS07715 (NPA43_07715) fliE 1539781..1540098 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NPA43_RS07720 (NPA43_07720) fliF 1540148..1541740 (+) 1593 WP_099725867.1 flagellar basal-body MS-ring/collar protein FliF -
  NPA43_RS07725 (NPA43_07725) fliG 1541752..1542768 (+) 1017 WP_034317753.1 flagellar motor switch protein FliG -
  NPA43_RS07730 (NPA43_07730) fliH 1542761..1543525 (+) 765 WP_256499559.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29049.25 Da        Isoelectric Point: 4.7176

>NTDB_id=712228 NPA43_RS07700 WP_099725869.1 1537860..1538639(+) (codY) [Bacillus pumilus strain NDY-10]
MALLQKTRIINSMLQDSAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENTRMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPVENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDRFTDDDLILAEYGATVVGMEILREKGE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=712228 NPA43_RS07700 WP_099725869.1 1537860..1538639(+) (codY) [Bacillus pumilus strain NDY-10]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATTCAGCGGGGAAACCAGTTAATTTTAAAGAAAT
GGCGGAAACACTGAGAGATGTCATTGATTCAAACATTTTTGTGTTGAGTAGAAGAGGGAAACTTCTTGGTTACTCAATCA
ATCAACAGATTGAAAATACACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCAGAAGAATATACGAAGAGTCTATTC
AACGTACCTGAAACTTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCAGTTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACCATTGTTCCGATTATCGGCGGTGGGGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
GATTCACTGATGATGATTTAATACTTGCTGAGTACGGAGCAACAGTTGTTGGAATGGAGATCCTTCGTGAAAAAGGAGAA
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTTCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTCGAGGCGAT
TGAGCACATCTTTGAAGAACTTGATGGAAACGAAGGACTCCTTGTGGCAAGTAAAATTGCAGACCGTGTCGGTATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAATTAGAAAGTGCAGGCGTGATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAGCTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IYU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.139

100

0.961
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471