Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NM897_RS13555 Genome accession   NZ_CP101819
Coordinates   2757234..2759681 (+) Length   815 a.a.
NCBI ID   WP_341960847.1    Uniprot ID   -
Organism   Planococcus maritimus strain KRIBB-KS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2752234..2764681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM897_RS13530 (NM897_13540) - 2752414..2753697 (-) 1284 WP_341960844.1 replication-associated recombination protein A -
  NM897_RS13535 (NM897_13545) - 2753835..2754251 (+) 417 WP_341960845.1 Rrf2 family transcriptional regulator -
  NM897_RS13540 (NM897_13550) - 2754266..2755399 (+) 1134 WP_182093238.1 cysteine desulfurase family protein -
  NM897_RS13545 (NM897_13555) mnmA 2755415..2756533 (+) 1119 WP_341960846.1 tRNA 2-thiouridine(34) synthase MnmA -
  NM897_RS13550 (NM897_13560) - 2756548..2757207 (+) 660 WP_182093240.1 tetratricopeptide repeat protein -
  NM897_RS13555 (NM897_13565) recD2 2757234..2759681 (+) 2448 WP_341960847.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NM897_RS13560 (NM897_13570) alaS 2759987..2762611 (+) 2625 WP_341960848.1 alanine--tRNA ligase -
  NM897_RS13565 (NM897_13575) - 2762699..2762965 (+) 267 WP_058383651.1 IreB family regulatory phosphoprotein -
  NM897_RS13570 (NM897_13580) ruvX 2762968..2763384 (+) 417 WP_068461903.1 Holliday junction resolvase RuvX -
  NM897_RS13575 (NM897_13585) - 2763398..2763706 (+) 309 WP_058380964.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 815 a.a.        Molecular weight: 90078.75 Da        Isoelectric Point: 5.0270

>NTDB_id=712145 NM897_RS13555 WP_341960847.1 2757234..2759681(+) (recD2) [Planococcus maritimus strain KRIBB-KS-1]
MSGQIDLFQKESEFVLGRPVVSIFHNPQNLFSIIKVKIQQTNTSYTEKEIIVSGYFPKLSLEEQYKFTGSVKNHPKYGVQ
FQAETFKKEVPETEQGVVHYLSSDLFNGVGRKTAETIVKKLGSDAIKKILEDPDALDGVPRLSDEKKDTIRSTLQMNLGL
ERVMIQLNDWGFGPQIGMRIYQAYREETIDILSKNPFQLIEEIEGIGFHRADELGSKLGITGSHPDRIKAAILHVLNQAS
LSEGHVFVDAKNLIPLVKQLLEASQSADITIDSITQAAIELNEEGKVAGEETRLYLPSLYYSEVGIATKLETLIAEQETR
DGFPSSEIRKALGDAEERLGVNYAETQIDAIEKSLNSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLDPKEYGKKKEP
FPIILAAPTGRAAKRLSESTDLPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPVDAQLIFV
GDQDQLPPVGPGQVLRDMLASGRIPKVELTEIYRQSSGSSIIELAHQMKAGKLPDNIEAKTSDRSFIRAGADQISTVVEK
VVKSALSKGHTIKDIQVLAPMYKGPAGIDALNQMIQQMVNPNDDGSRKELVFGDVTYRINDKVLQLVNQPESNVFNGDMG
EVVAIMKAKETVEKQDLLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKAQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
RDFLILCGDPGVFRYGVERTDDSSRLTTLAVRLGVAETPATPEGTVPDNPAQAKTEQAVSETQADEPKSLTQQNAHRIHP
MIGMEGITPRDFQEA

Nucleotide


Download         Length: 2448 bp        

>NTDB_id=712145 NM897_RS13555 WP_341960847.1 2757234..2759681(+) (recD2) [Planococcus maritimus strain KRIBB-KS-1]
ATGTCCGGACAGATTGATTTATTCCAAAAAGAAAGTGAATTTGTGCTGGGGCGTCCGGTCGTCTCGATTTTTCACAACCC
CCAAAACCTCTTCTCCATCATTAAAGTGAAAATCCAGCAAACCAACACCTCGTATACTGAAAAGGAAATCATCGTCTCCG
GTTATTTCCCGAAACTGTCGCTTGAAGAACAATACAAGTTTACCGGCAGCGTTAAGAATCATCCAAAATACGGCGTGCAG
TTCCAGGCAGAAACCTTTAAGAAAGAAGTGCCGGAAACCGAACAAGGCGTTGTCCATTATTTATCGAGCGATTTGTTCAA
CGGTGTCGGTCGCAAAACGGCCGAGACCATCGTTAAAAAACTCGGCAGCGATGCTATCAAGAAAATCCTTGAAGACCCAG
ATGCACTTGATGGCGTACCGCGTTTATCAGATGAAAAAAAAGATACCATCCGCTCGACTTTGCAGATGAATTTAGGCCTT
GAACGCGTCATGATCCAATTAAACGATTGGGGATTCGGCCCGCAAATCGGTATGAGAATTTACCAAGCCTACCGGGAAGA
AACGATTGACATTCTTTCGAAAAATCCGTTTCAGCTGATCGAGGAAATTGAAGGCATCGGCTTTCATCGTGCGGACGAAC
TCGGCTCAAAACTTGGCATCACCGGTAGCCACCCTGACCGTATTAAAGCAGCCATCCTACATGTGCTGAACCAAGCATCG
TTATCGGAAGGGCATGTCTTTGTCGACGCGAAGAACTTAATCCCACTCGTCAAGCAATTGCTTGAAGCAAGCCAATCAGC
GGACATTACAATCGACTCGATCACACAGGCGGCAATCGAATTAAACGAGGAAGGCAAAGTGGCGGGGGAAGAAACCCGCC
TTTATTTGCCGTCATTGTATTATTCGGAAGTCGGCATCGCAACTAAGCTCGAGACCTTGATTGCCGAGCAGGAAACGCGC
GATGGCTTTCCATCTTCTGAAATCCGCAAAGCACTTGGCGATGCTGAAGAGCGGCTTGGCGTCAATTATGCGGAGACTCA
GATCGATGCCATTGAAAAAAGCTTGAATTCCAGCGTCATGATTCTCACAGGCGGGCCAGGGACAGGCAAGACGACGGTCG
TTCGCGGCTTAGTCGAAGTCTATGCCGAACTGCATGGTCTGTCGCTCGATCCGAAAGAGTATGGCAAGAAAAAAGAACCG
TTTCCGATCATTTTGGCAGCTCCAACAGGTCGTGCGGCGAAACGGCTGAGTGAATCGACTGATTTGCCGGCGATGACGAT
TCACCGCTTGCTCGGCTTTAACGGCCAAGAGAAAGATGAAGAAACCGAAAAAGAAATTGAAGGCAAATTGATCATCATCG
ATGAAATGTCGATGGTCGACACATGGCTTGCCCATCAATTGTTAAAAGCGGTGCCAGTCGATGCCCAGCTAATTTTTGTC
GGCGACCAGGATCAATTGCCGCCTGTTGGCCCTGGCCAAGTGCTGCGTGATATGCTAGCATCCGGCCGCATCCCGAAAGT
CGAGCTGACGGAAATTTACCGCCAAAGTTCGGGTTCTTCGATAATCGAACTCGCACACCAAATGAAAGCCGGAAAACTGC
CGGATAATATCGAAGCAAAAACGTCAGACCGTTCATTTATCCGTGCCGGAGCAGACCAAATTTCGACCGTTGTCGAAAAA
GTGGTTAAGAGCGCTTTGTCAAAAGGGCATACGATCAAAGACATTCAAGTGCTCGCACCGATGTATAAAGGGCCAGCAGG
CATCGATGCGCTCAACCAAATGATCCAGCAGATGGTCAATCCGAATGATGACGGTTCCCGCAAAGAGCTGGTATTTGGCG
ATGTCACTTACCGTATTAACGACAAAGTGCTGCAGCTAGTGAATCAACCCGAGAGCAATGTCTTCAATGGGGATATGGGC
GAAGTGGTCGCCATCATGAAAGCAAAAGAAACGGTGGAAAAGCAGGATTTGCTCGTTGTGTCATTTGACGGCATCGAAGT
GACTTATCAACGTAGCGATTTAAATCAGCTGACGCTCGCTTATTGCTGTTCGATTCATAAAGCGCAAGGTTCGGAATTCC
CGACGGTCATCATGCCGGTTGTTCGTGGTTACATGAAAATGCTGCGACGCAATTTGCTCTACACTGGCATCACAAGAAGC
CGCGACTTTTTAATTCTTTGCGGTGACCCGGGCGTATTTCGCTACGGCGTCGAGCGCACCGATGATTCGAGCCGTTTGAC
GACCTTGGCAGTTAGGTTGGGAGTTGCTGAGACACCAGCAACGCCAGAAGGAACAGTGCCAGACAATCCGGCACAAGCAA
AAACCGAACAGGCGGTTTCCGAAACGCAAGCAGACGAGCCAAAAAGCCTGACACAGCAAAATGCCCACCGCATCCATCCG
ATGATCGGCATGGAAGGCATCACCCCGCGCGACTTCCAAGAAGCGTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

AAA domain (AAA_30)

(343-550)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.895

99.018

0.544