Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NPA28_RS13905 Genome accession   NZ_CP101718
Coordinates   2731184..2733544 (-) Length   786 a.a.
NCBI ID   WP_256766263.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2726184..2738544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS13885 (NPA28_13885) - 2726262..2727815 (+) 1554 WP_059293509.1 SH3 domain-containing protein -
  NPA28_RS13890 (NPA28_13890) dtd 2727841..2728281 (-) 441 WP_059293508.1 D-aminoacyl-tRNA deacylase -
  NPA28_RS13895 (NPA28_13895) relA 2728294..2730498 (-) 2205 WP_044154273.1 GTP diphosphokinase -
  NPA28_RS13900 (NPA28_13900) - 2730666..2731178 (-) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  NPA28_RS13905 (NPA28_13905) recJ 2731184..2733544 (-) 2361 WP_256766263.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NPA28_RS13910 (NPA28_13910) - 2733611..2733946 (-) 336 WP_024122318.1 lipopolysaccharide assembly LapA domain-containing protein -
  NPA28_RS13915 (NPA28_13915) - 2734023..2734520 (-) 498 WP_044154248.1 cation:proton antiporter regulatory subunit -
  NPA28_RS13920 (NPA28_13920) secDF 2734679..2736892 (-) 2214 WP_256766264.1 protein translocase subunit SecDF -
  NPA28_RS13925 (NPA28_13925) - 2736930..2737226 (-) 297 WP_256766265.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88257.81 Da        Isoelectric Point: 4.9476

>NTDB_id=711775 NPA28_RS13905 WP_256766263.1 2731184..2733544(-) (recJ) [Bacillus halotolerans strain S-5]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAENARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFHSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGEIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADNTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEESIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETTTLLQSEDLRHDVHVISSEDQAKAYELDGAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGAFDLKKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=711775 NPA28_RS13905 WP_256766263.1 2731184..2733544(-) (recJ) [Bacillus halotolerans strain S-5]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAACGCGAGGCTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTAGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCGGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCTAATGAACAGGCGTTTCATTCAATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACTGACCACCATGAGCCTGGACCAGAGCTTCCGGATGTTCATGCGATCGTTCATCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGCGTGGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
TGCCAGATGAACTTCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTTGGCTTAAAAGAACTGATTAAGCTCTCAGGCGGAGAAAT
CGGAGAAGCAAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAATGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATTTGCTTATGTCAGAGGACCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAATCAAACTGCGATTGT
CGTGGCAAAAGCAGGGTGGAATCCCGGAGTCGTCGGAATTGTAGCTTCAAAGCTTGTAGACCGTTTCTACCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATCAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAAGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACAATACGCTTACAGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCTCCCTTCGGCATGCTGAAT
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCATCCCAGCTTGACTGCGTCGGTTTTAATAAAGGCGAGCTTGAGGAAAGTATTGTACCCGGTT
CAAAAATTTCGATTGTTGGTGAAATGTCGATCAATGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACTACAACGCTTCTTCAGTCTGAAGATCTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATATGAACTTGACGGTGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGCACGTTTGCTGGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCGCTTTTGACTTGAAAAAACACGGTT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGATAAGCGGAGCGAAAAAACGCGATTTAACGGACTCACAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

94.148

100

0.941