Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NPA28_RS08980 Genome accession   NZ_CP101718
Coordinates   1758028..1758807 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus halotolerans strain S-5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753028..1763807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS08960 (NPA28_08960) trmFO 1753731..1755038 (+) 1308 WP_106294747.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NPA28_RS08965 (NPA28_08965) xerC 1755106..1756011 (+) 906 WP_256766906.1 tyrosine recombinase XerC -
  NPA28_RS08970 (NPA28_08970) clpQ 1756024..1756569 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  NPA28_RS08975 (NPA28_08975) hslU 1756586..1757989 (+) 1404 WP_202647285.1 HslU--HslV peptidase ATPase subunit -
  NPA28_RS08980 (NPA28_08980) codY 1758028..1758807 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NPA28_RS08985 (NPA28_08985) flgB 1759190..1759579 (+) 390 WP_044155900.1 flagellar basal body rod protein FlgB -
  NPA28_RS08990 (NPA28_08990) flgC 1759579..1760031 (+) 453 WP_044155899.1 flagellar basal body rod protein FlgC -
  NPA28_RS08995 (NPA28_08995) fliE 1760042..1760362 (+) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  NPA28_RS09000 (NPA28_09000) fliF 1760408..1762018 (+) 1611 WP_059335795.1 flagellar basal-body MS-ring/collar protein FliF -
  NPA28_RS09005 (NPA28_09005) fliG 1762031..1763047 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NPA28_RS09010 (NPA28_09010) fliH 1763040..1763792 (+) 753 WP_256766907.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=711753 NPA28_RS08980 WP_003220850.1 1758028..1758807(+) (codY) [Bacillus halotolerans strain S-5]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=711753 NPA28_RS08980 WP_003220850.1 1758028..1758807(+) (codY) [Bacillus halotolerans strain S-5]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGAAAACTTCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGACATCAATAGTGAGTACACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAACCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467