Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   POF63_RS01145 Genome accession   NZ_CP116708
Coordinates   191904..192203 (+) Length   99 a.a.
NCBI ID   WP_038406052.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 sCas9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186904..197203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF63_RS01120 (POF63_01120) - 188773..189138 (+) 366 WP_000285373.1 DUF1033 family protein -
  POF63_RS01125 (POF63_01125) comGA 189310..190281 (+) 972 WP_000250801.1 competence type IV pilus ATPase ComGA Machinery gene
  POF63_RS01130 (POF63_01130) comGB 190175..191218 (+) 1044 WP_228313184.1 competence type IV pilus assembly protein ComGB Machinery gene
  POF63_RS01135 (POF63_01135) comGC/cglC 191215..191544 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  POF63_RS01140 (POF63_01140) comGD 191519..191932 (+) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  POF63_RS01145 (POF63_01145) comGE 191904..192203 (+) 300 WP_038406052.1 competence type IV pilus minor pilin ComGE Machinery gene
  POF63_RS01150 (POF63_01150) comGF 192157..192618 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  POF63_RS01155 (POF63_01155) comGG 192596..192967 (+) 372 WP_000601105.1 competence type IV pilus minor pilin ComGG Machinery gene
  POF63_RS01160 (POF63_01160) comGH 193082..194056 (+) 975 WP_001008567.1 class I SAM-dependent methyltransferase Machinery gene
  POF63_RS01165 (POF63_01165) - 194088..195281 (+) 1194 WP_000047534.1 acetate kinase -
  POF63_RS01170 (POF63_01170) - 195409..195601 (+) 193 Protein_174 helix-turn-helix transcriptional regulator -
  POF63_RS01175 (POF63_01175) - 195580..195846 (+) 267 Protein_175 hypothetical protein -
  POF63_RS01180 (POF63_01180) - 195915..196580 (+) 666 WP_000008107.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11238.33 Da        Isoelectric Point: 10.6118

>NTDB_id=711213 POF63_RS01145 WP_038406052.1 191904..192203(+) (comGE) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
MVTIVRKKIRAYILLESLVGLAILVTITSLVISEINRQQSHIARRQHEQEVLILARMAVQTDQKILEANGVNIRIEESKN
KIVLFEGNKEILHVSKVKG

Nucleotide


Download         Length: 300 bp        

>NTDB_id=711213 POF63_RS01145 WP_038406052.1 191904..192203(+) (comGE) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
GTGGTAACTATCGTAAGAAAGAAAATTAGAGCCTATATTTTACTGGAAAGCCTAGTGGGATTAGCTATTTTAGTTACTAT
TACAAGTTTAGTAATAAGTGAAATCAATCGTCAACAATCTCATATTGCAAGAAGGCAACATGAGCAAGAAGTATTGATAT
TAGCTAGAATGGCTGTGCAAACTGATCAAAAAATATTAGAAGCAAATGGTGTTAATATTCGCATTGAAGAAAGTAAAAAT
AAAATTGTGCTCTTTGAAGGTAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

38.542

96.97

0.374
  comGE Streptococcus mutans UA159

38.542

96.97

0.374