Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NON14_RS06325 Genome accession   NZ_CP101642
Coordinates   1263479..1264345 (+) Length   288 a.a.
NCBI ID   WP_076632494.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1258479..1269345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS06295 (NON14_06280) - 1259344..1260246 (+) 903 WP_409043042.1 SGNH/GDSL hydrolase family protein -
  NON14_RS06300 (NON14_06285) - 1260259..1260888 (+) 630 WP_056947600.1 YpmS family protein -
  NON14_RS06305 (NON14_06290) - 1260899..1261123 (+) 225 WP_016265150.1 YozE family protein -
  NON14_RS06310 (NON14_06295) lepB 1261148..1261678 (+) 531 WP_076632492.1 signal peptidase I -
  NON14_RS06315 (NON14_06300) ylqF 1261810..1262661 (+) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  NON14_RS06320 (NON14_06305) - 1262663..1263424 (+) 762 WP_112217684.1 ribonuclease HII -
  NON14_RS06325 (NON14_06310) dprA 1263479..1264345 (+) 867 WP_076632494.1 DNA-processing protein DprA Machinery gene
  NON14_RS06330 (NON14_06315) - 1264446..1265312 (+) 867 WP_099713204.1 NAD(P)H-binding protein -
  NON14_RS06335 (NON14_06320) - 1265341..1265775 (+) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  NON14_RS06340 (NON14_06325) topA 1266026..1268110 (+) 2085 WP_016265142.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31831.82 Da        Isoelectric Point: 8.8338

>NTDB_id=711145 NON14_RS06325 WP_076632494.1 1263479..1264345(+) (dprA) [Latilactobacillus sakei strain HRB10]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=711145 NON14_RS06325 WP_076632494.1 1263479..1264345(+) (dprA) [Latilactobacillus sakei strain HRB10]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGTAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.958

100

0.99