Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NON14_RS02790 Genome accession   NZ_CP101642
Coordinates   574305..574865 (+) Length   186 a.a.
NCBI ID   WP_409043598.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HRB10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 569305..579865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NON14_RS02765 (NON14_02760) - 569463..570575 (+) 1113 WP_011375372.1 PIN/TRAM domain-containing protein -
  NON14_RS02770 (NON14_02765) cysS 571006..572412 (+) 1407 WP_056947506.1 cysteine--tRNA ligase -
  NON14_RS02775 (NON14_02770) - 572409..572816 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  NON14_RS02780 (NON14_02775) rlmB 572803..573690 (+) 888 WP_082267809.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NON14_RS02785 (NON14_02780) - 573694..574227 (+) 534 WP_337457408.1 NYN domain-containing protein -
  NON14_RS02790 (NON14_02785) sigH 574305..574865 (+) 561 WP_409043598.1 sigma-70 family RNA polymerase sigma factor Regulator
  NON14_RS02795 (NON14_02790) rpmG 574991..575140 (+) 150 WP_011375366.1 50S ribosomal protein L33 -
  NON14_RS02800 (NON14_02795) secE 575150..575329 (+) 180 WP_011375365.1 preprotein translocase subunit SecE -
  NON14_RS02805 (NON14_02800) nusG 575427..575975 (+) 549 WP_250824601.1 transcription termination/antitermination protein NusG -
  NON14_RS02810 (NON14_02805) - 576555..577412 (+) 858 WP_076632144.1 alpha/beta fold hydrolase -
  NON14_RS02815 (NON14_02810) rplK 577538..577963 (+) 426 WP_004270859.1 50S ribosomal protein L11 -
  NON14_RS02820 (NON14_02815) rplA 578062..578751 (+) 690 WP_004270847.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22093.28 Da        Isoelectric Point: 7.4752

>NTDB_id=711127 NON14_RS02790 WP_409043598.1 574305..574865(+) (sigH) [Latilactobacillus sakei strain HRB10]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNVLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSMDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=711127 NON14_RS02790 WP_409043598.1 574305..574865(+) (sigH) [Latilactobacillus sakei strain HRB10]
ATGGAACAAACAAAGCGTGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAGTGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATGTACTACGACGAGAACTTGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGTCAGCTTTCAATGGATGAGGCTTGTTGCCAACTC
GATTGTACGATTGACCAGTTGAAACGAGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

95.699

100

0.957