Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NN913_RS08075 Genome accession   NZ_CP101621
Coordinates   1592800..1593579 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 906     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587800..1598579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NN913_RS08055 (NN913_08050) trmFO 1588487..1589794 (+) 1308 WP_255764289.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NN913_RS08060 (NN913_08055) xerC 1589864..1590781 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  NN913_RS08065 (NN913_08060) hslV 1590797..1591342 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NN913_RS08070 (NN913_08065) hslU 1591350..1592762 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  NN913_RS08075 (NN913_08070) codY 1592800..1593579 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NN913_RS08080 (NN913_08075) flgB 1593933..1594322 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NN913_RS08085 (NN913_08080) flgC 1594322..1594774 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  NN913_RS08090 (NN913_08085) fliE 1594785..1595105 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  NN913_RS08095 (NN913_08090) fliF 1595148..1596758 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  NN913_RS08100 (NN913_08095) fliG 1596771..1597787 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NN913_RS08105 (NN913_08100) fliH 1597780..1598535 (+) 756 WP_015388237.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=711012 NN913_RS08075 WP_003154263.1 1592800..1593579(+) (codY) [Bacillus velezensis strain 906]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=711012 NN913_RS08075 WP_003154263.1 1592800..1593579(+) (codY) [Bacillus velezensis strain 906]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471